Silkworm Genome Informatics Database

Gene

KWMTBOMO00721

Pre Gene Modal

BGIBMGA003260

Annotation

PREDICTED:_zinc_finger_protein_235-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr2(-):1467187-1472055 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.809

CDS

ATGGATGCAGTGAAATTCGAAAAGATATGTCGGACATGTCTCTCTGAATCGACGGATATGAGGTCGCTAAATTCTAATATAAATAACGACAATCGTAAACTACAAGACGTTTTAGAATTTGTTATGGATAGAAACATTATTAATGATGAGAGACTACCGAAGTTTATCTGCTTCGAGTGCGAAACTGTAATGATTAAGGCTGAATCCTTCAAACGTCGTTGCTTAGAATCTGAGTCGGCTTTGAAAAATTGCATCGGGGCAACAGAAAGAAAGTTAAGTTTTATAGAAATTGATCAAAACACGATACTAAAGAACGAAAGCAACTACGAATGTATCACGGAAGCTTTGAAACATTCCGAAACAGACACAGCTTTTTGTGTTAAGAATTTAAATGACATCACAATAAAGAAATGTTCATTTGAAAACTTCGATATATTATCGGATGATGTTAATGACGCTGATTCAATAAAAGAAGAATTGGACGATTGCAACGTCCCCGACGACGACACCCAAAGCCTAAATTTAAAACAAACAGTCAAATACAAAGATAAAAACAGATCAGACTTAAAAACGTGCAATGGTAACAAGTTAAAGAAAGTTAAAAAGAAAACGAACCCCCGGTTAATACCAATAACGAACCAAATAGAATGTCAAAAATGCGATCAGAAATTCGCTAATGTATCAGCTTGGAGCTCACACCAGCAAATGCACAAGGAAAAAATGAAAGAAACATTTCAATGCAACGTATGCCCAAAAAAGTTTAAAAAACAAACCTCATTGCATACTCATCTAAACAGACATGATCGAGACTCATCAAAGTACATATGCGATGTTTGTAAAAGGGAATTCAAGTACAAAGGGTACTTAGAAAGTCATATAATATCGATGCACACTCGTAACGGTTTCACATGCGAATTCTGTATGCAATCATTCGATAGTAAAGACACATTCGAGATACATCGGAATGCTCATATAATAGAGAAAAAACATCAGTGCCTTATCTGTCATAAAAGTTTCTATATGGCTTCGACATTGCGAGACCATTTGAGGGTGCACACAGGGGAAAGACCGTTTTTATGTGCGATATGTGGGAAGGGTTTCACGCAGAAGAATAACTTGGCTCAGCACGTGAGAAGACATCAGGGTAACAAGCCCCACCAGTGCGAAAATTGCGAGAAAAGTTTCGTTTCCAAAGGGGAGTTAGAAGCTCACAGTCGGAAGCACAGCGGCGCTCATCCGTTCGTGTGTGACGACTGCGGGCGTGGCTTCACTACCTCCAGTTCACTCGTCAAACATAGAAGGATCCACACTGGCGAGCGACCATACGCTTGTGATCTCTGTCCACTTCGTTTCGCGGTTTCCGGCACCTTGAAGAACCACCGTCGGCGGCACACCGGTGAGAGGCCCTACCACTGCTCGTATTGCGAGAAGGCTTTTGTGCAGCGCAACGACCTGATATCGCACATCCGCTGCCACACCGGCGAGCGTCCGTACGTGTGCGCGCAGTGCGGACAGAGCTTCCGCAAGCCGTCCGGCCTGCGCGCGCACGCCCGGGTGCACGCCGCACACGCGCCGGCGCCCTGA

Protein

MDAVKFEKICRTCLSESTDMRSLNSNINNDNRKLQDVLEFVMDRNIINDERLPKFICFECETVMIKAESFKRRCLESESALKNCIGATERKLSFIEIDQNTILKNESNYECITEALKHSETDTAFCVKNLNDITIKKCSFENFDILSDDVNDADSIKEELDDCNVPDDDTQSLNLKQTVKYKDKNRSDLKTCNGNKLKKVKKKTNPRLIPITNQIECQKCDQKFANVSAWSSHQQMHKEKMKETFQCNVCPKKFKKQTSLHTHLNRHDRDSSKYICDVCKREFKYKGYLESHIISMHTRNGFTCEFCMQSFDSKDTFEIHRNAHIIEKKHQCLICHKSFYMASTLRDHLRVHTGERPFLCAICGKGFTQKNNLAQHVRRHQGNKPHQCENCEKSFVSKGELEAHSRKHSGAHPFVCDDCGRGFTTSSSLVKHRRIHTGERPYACDLCPLRFAVSGTLKNHRRRHTGERPYHCSYCEKAFVQRNDLISHIRCHTGERPYVCAQCGQSFRKPSGLRAHARVHAAHAPAP

Uniprot

H9J173 A0A2A4K7J9 A0A2H1VGT5 A0A194QZA0 A0A1B0CIX8 A0A1Y1N9K8 + More
D6WK50 A0A0T6B5C2 A0A0L7L9R5 A0A1W4XDG1 A0A1Y1MJT1 A0A1W4WGF0 D6WK38 Q296H7 D6WN06 A0A1W4WKG9

Pubmed

19121390 26354079 28004739 18362917 19820115 26227816 + More
15632085 17994087

EMBL

BABH01031386 NWSH01000062 PCG80049.1 ODYU01002490 SOQ40036.1 KQ460890 + More
KPJ10868.1 AJWK01013864 AJWK01013865 GEZM01009556 GEZM01009554 JAV94533.1 KQ971343 EFA03090.1 LJIG01009819 KRT82317.1 JTDY01002061 KOB72207.1 GEZM01034914 GEZM01034913 GEZM01034912 GEZM01034911 GEZM01034910 GEZM01034909 GEZM01034908 GEZM01034907 GEZM01034906 GEZM01034905 GEZM01034904 GEZM01034903 JAV83537.1 KQ971342 EFA03619.2 CM000070 EAL28480.1 EFA03255.2

Proteomes

UP000005204 UP000218220 UP000053240 UP000092461 UP000007266 UP000037510 + More
UP000192223 UP000001819

PRIDE

H9J173

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05605   zf-Di19

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD
IPR016024   ARM-type_fold
IPR016021   MIF4-like_sf
IPR008598   Di19_Zn_binding_dom

SUPFAM

SSF57667 SSF57667 + More
SSF48371 SSF48371

Gene 3D

1.25.40.180

ProteinModelPortal

H9J173 A0A2A4K7J9 A0A2H1VGT5 A0A194QZA0 A0A1B0CIX8 A0A1Y1N9K8 + More
D6WK50 A0A0T6B5C2 A0A0L7L9R5 A0A1W4XDG1 A0A1Y1MJT1 A0A1W4WGF0 D6WK38 Q296H7 D6WN06 A0A1W4WKG9

PDB

5WJQ E-value=6.91716e-46, Score=465

KEGG

101739777 no KO assigned | (RefSeq) zinc finger protein OZF-like

GO

GO:0003676 GO:0005634 GO:0008270 GO:0008168 GO:0046872 GO:0019012 GO:0016021 GO:0050661 GO:0006559 GO:0004887

Length:

527

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00263

outside

1 - 527

Pi

255.539589

Theta

163.815597

Tajima's D

1.550849

CLR

0.411412

CSRT

0.79686015699215

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics