HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.8	0.3	0.075	4.5	2	23	265	286
2	14.8	1.8	0.00045	0.027	1	23	292	315
3	17.9	0.1	4.7e-05	0.0028	2	20	322	340
4	18.7	1.1	2.6e-05	0.0016	2	23	363	384
5	18.3	0.6	3.7e-05	0.0022	3	23	393	413
6	18.3	0.3	3.6e-05	0.0021	1	23	419	441
7	19.0	3.0	2.1e-05	0.0013	1	23	447	469
8	10.6	2.2	0.01	0.62	1	23	475	497
9	13.5	2.5	0.0012	0.07	1	23	503	526

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.075
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC +C k  ++  +L +H r+H
  KWMTBOMO00707 265 KCLICAKISSNYRLLINHARSH 286
                    7********************9 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 0.00045
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C++C+k  ++ s+Lk+H++t H
  KWMTBOMO00707 292 YHCEYCNKYIPSISELKKHRNTaH 315
                    89********************99 PP

  == domain 3  score: 17.9 bits;  conditional E-value: 4.7e-05
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +C+ Cg++F ++++L+ H+
  KWMTBOMO00707 322 YCHNCGEKFDTPESLEDHM 340
                    6*****************9 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 2.6e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC+ C++ Fk+ snL +H ++H
  KWMTBOMO00707 363 KCDMCSRDFKSLSNLIQHKKVH 384
                    8*******************99 PP

  == domain 5  score: 18.3 bits;  conditional E-value: 3.7e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cgk+F +k  L++H+ +H
  KWMTBOMO00707 393 CHKCGKMFFTKGALVNHLAIH 413
                    ******************999 PP

  == domain 6  score: 18.3 bits;  conditional E-value: 3.6e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C+  F+ + nL++H+  H
  KWMTBOMO00707 419 HKCEYCPLAFRARGNLQAHLVLH 441
                    79*****************9888 PP

  == domain 7  score: 19.0 bits;  conditional E-value: 2.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ CgksF+ k +Lk+H  +H
  KWMTBOMO00707 447 FVCEQCGKSFRMKRHLKSHSIMH 469
                    89*****************8888 PP

  == domain 8  score: 10.6 bits;  conditional E-value: 0.01
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+k F+ k  L+ H+r H
  KWMTBOMO00707 475 YACEFCNKLFRFKTRLNLHLRQH 497
                    88*******************99 PP

  == domain 9  score: 13.5 bits;  conditional E-value: 0.0012
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C  C + F++ sn+k+H+++ H
  KWMTBOMO00707 503 YNCIQCQRDFTNGSNFKKHMKRrH 526
                    67779*****************99 PP