Gene

KWMTBOMO00707

Pre Gene Modal

BGIBMGA003226

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF26.1-like_[Plutella_xylostella]

Location

Bomo_Chr2(+):872755-874568      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.623

CDS

ATGACCGAAGAGAAAAGCTATTGCAGGCTTTGCGCTGAAGCGACTTCGAACAATCAGCTTTTAGCCGCTGAAGATGTCGACGGAATAAATTTTAAAATATTAAAGAAAATGCAGTGGATAAACGTTGATGTTTCTAACGATTTACTACCGAACGCTATTTGTTTCGCGTGTTTCGACTCCTTAGAACGTACGTGGATATTTTTGCACAACGTCAGAGCGGCTCAAAAGAAATTGGCAAAGATCTTTTCTTGCGATAACAATGTGCATACAACGAATGAGGACGTTGGTCGACCTGTCGATTGCGACTGGGAGGTTCTGACCGCGGCCAACGTAAAAGAAGAATCCGAGGTGCCCACAAATAATTTCGAAAATGAAAGAGCCGCTGAAAAGAAATTAGCACATATCCTTTCTTGCGATAACAGAGTGCATACACCTAATGAGGACGCTGGTCGTCCTATCGATTGCGAGTGGGAGGTCCTGACCGCGGCTAATGTAAAAGAAGAATCCGACGAGCCCACAAATAATTTTGAAGATGAAATGCTCATAGAAATCAATGAAATAAAAATCGAGAAGACAAGTGACATTGAAACTGACAGCGACATACCATTGCTACAAACAAGGGTGAAAAAGAAAAAAAAGAAAAAAAAACTAAAAAACATTGTACACATTACATCGGAAGATATAACCTGGGATGATTACACGAGCCTCTGTGCAAACTGTGACGCCCAATGCATGACCATAGCAGCCCTACGATCACATTCTTTAGAGAAACACGCTCGTTGCTTTGTATCAAAATGTCTGATCTGTGCAAAAATATCTTCTAATTATCGTTTATTAATAAACCATGCCCGAAGTCACAATCAAATGTTAAATTACCACTGTGAATACTGCAATAAATATATACCGTCAATCAGTGAACTAAAGAAACATAGGAACACGGCACACCAACATGTTTACAAGACTTACTGTCACAATTGTGGTGAGAAATTTGATACGCCGGAATCTTTAGAAGATCACATGATCGCATATTCAAACTCTTACAAAAAATGCGGTAGGAGATCGACAAAAATTAGGCCTCACAATCTTAAATGTGATATGTGCAGCAGAGACTTCAAGTCATTAAGTAATCTAATTCAACACAAAAAGGTCCACATGGAACGAACCAGAGACTTTGGCTGTCACAAATGTGGTAAAATGTTCTTTACGAAGGGAGCCCTGGTGAACCATTTGGCGATTCACGAGGAAGTGAGACCGCACAAATGTGAGTACTGCCCTCTGGCCTTCCGGGCTCGGGGGAACCTGCAGGCCCACCTCGTGTTGCACTCAGGATCGAAGCCGTTTGTGTGCGAACAGTGCGGGAAGAGTTTCCGTATGAAGAGACACTTGAAATCTCATTCCATTATGCATACAGATTTGATGCCGTATGCATGCGAGTTCTGCAATAAATTGTTTAGGTTTAAAACAAGATTGAATCTGCATTTGAGACAGCACACCGGAGCCAAGCCCTACAATTGCATTCAGTGTCAAAGAGACTTCACGAACGGTTCAAATTTCAAAAAACATATGAAACGTAGACACAACATTGATATATCAAAGAAGAAAAAATATACAATAGTAGATAAACCTGATGAGAAAATCGAAAGTGAAGAAGGAAAGGCTTGA

Protein

MTEEKSYCRLCAEATSNNQLLAAEDVDGINFKILKKMQWINVDVSNDLLPNAICFACFDSLERTWIFLHNVRAAQKKLAKIFSCDNNVHTTNEDVGRPVDCDWEVLTAANVKEESEVPTNNFENERAAEKKLAHILSCDNRVHTPNEDAGRPIDCEWEVLTAANVKEESDEPTNNFEDEMLIEINEIKIEKTSDIETDSDIPLLQTRVKKKKKKKKLKNIVHITSEDITWDDYTSLCANCDAQCMTIAALRSHSLEKHARCFVSKCLICAKISSNYRLLINHARSHNQMLNYHCEYCNKYIPSISELKKHRNTAHQHVYKTYCHNCGEKFDTPESLEDHMIAYSNSYKKCGRRSTKIRPHNLKCDMCSRDFKSLSNLIQHKKVHMERTRDFGCHKCGKMFFTKGALVNHLAIHEEVRPHKCEYCPLAFRARGNLQAHLVLHSGSKPFVCEQCGKSFRMKRHLKSHSIMHTDLMPYACEFCNKLFRFKTRLNLHLRQHTGAKPYNCIQCQRDFTNGSNFKKHMKRRHNIDISKKKKYTIVDKPDEKIESEEGKA

Uniprot

H9J139   A0A2H1VE60   A0A2A4IW19   A0A0N1IEG0   A0A0L7LDT9   A0A212FAD0   + More
A0A194PUN4   H9J196   A0A0N1IFZ7   A0A194PVA9   A0A2A4IYH7   A0A2H1VDP3   A0A0N0PBG2   A0A2H1VDI8   D6WM19   A0A2H1VF55   A0A0C9R581   A0A0J7N9Q1   A0A1B6FUI1   A0A158NLD7   A0A310SQL1   A0A2A3E268   K7JT31   A0A195B2A8   A0A0A9WIK4   A0A195CZP3   A0A0A9WB99   A0A0V0GCQ2   A0A232FB98   A0A0L7LHP3   A0A069DVT3   N6U6U8   A0A2A4JCH3   A0A0M9A4M1   A0A0L0CPS4   A0A0K8VAN7   A0A0K8V2C5   A0A0A1XDV5   A0A147AJZ0   A0A146Q6G1   A0A147AFX3   A0A146SBW7   A0A146RL18   A0A146Q4P7  

Pubmed

19121390    26354079    26227816    22118469    18362917    19820115    + More
21347285    20075255    25401762    26823975    28648823    26334808    23537049    26108605    25830018   

EMBL

BABH01031441    ODYU01001823    SOQ38554.1    NWSH01005726    PCG64005.1    KQ460940    + More
KPJ10633.1    JTDY01001547    KOB73570.1    AGBW02009496    OWR50687.1    KQ459593    KPI96693.1    BABH01031482    KPJ10603.1    KPI96694.1    NWSH01005474    PCG64173.1    ODYU01001969    SOQ38896.1    KPJ10604.1    SOQ38895.1    KQ971343    EFA04207.1    SOQ38894.1    GBYB01002000    GBYB01002001    JAG71767.1    JAG71768.1    LBMM01007818    KMQ89400.1    GECZ01015909    JAS53860.1    ADTU01019320    KQ760118    OAD61926.1    KZ288430    PBC25833.1    KQ976662    KYM78427.1    GBHO01038929    GBHO01025727    GBHO01019226    GBHO01011035    GDHC01017998    JAG04675.1    JAG17877.1    JAG24378.1    JAG32569.1    JAQ00631.1    KQ977115    KYN05609.1    GBHO01038932    GBHO01038928    GBHO01038927    GBHO01025725    GDHC01010384    JAG04672.1    JAG04676.1    JAG04677.1    JAG17879.1    JAQ08245.1    GECL01000480    JAP05644.1    NNAY01000478    OXU28111.1    JTDY01001068    KOB74972.1    GBGD01001082    JAC87807.1    APGK01037606    KB740948    ENN77375.1    NWSH01002022    PCG69398.1    KQ435757    KOX75843.1    JRES01000091    KNC34187.1    GDHF01016391    JAI35923.1    GDHF01019361    JAI32953.1    GBXI01015391    GBXI01005162    JAC98900.1    JAD09130.1    GCES01007572    JAR78751.1    GCES01134453    JAQ51869.1    GCES01008853    JAR77470.1    GCES01108251    JAQ78071.1    GCES01117194    JAQ69128.1    GCES01135348    JAQ50974.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000037510    UP000007151    UP000053268    + More
UP000007266    UP000036403    UP000005205    UP000242457    UP000002358    UP000078540    UP000078542    UP000215335    UP000019118    UP000053105    UP000037069   

PRIDE

H9J139    H9J196   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD

Interpro

IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9J139   A0A2H1VE60   A0A2A4IW19   A0A0N1IEG0   A0A0L7LDT9   A0A212FAD0   + More
A0A194PUN4   H9J196   A0A0N1IFZ7   A0A194PVA9   A0A2A4IYH7   A0A2H1VDP3   A0A0N0PBG2   A0A2H1VDI8   D6WM19   A0A2H1VF55   A0A0C9R581   A0A0J7N9Q1   A0A1B6FUI1   A0A158NLD7   A0A310SQL1   A0A2A3E268   K7JT31   A0A195B2A8   A0A0A9WIK4   A0A195CZP3   A0A0A9WB99   A0A0V0GCQ2   A0A232FB98   A0A0L7LHP3   A0A069DVT3   N6U6U8   A0A2A4JCH3   A0A0M9A4M1   A0A0L0CPS4   A0A0K8VAN7   A0A0K8V2C5   A0A0A1XDV5   A0A147AJZ0   A0A146Q6G1   A0A147AFX3   A0A146SBW7   A0A146RL18   A0A146Q4P7  

PDB

5V3M     E-value=2.01075e-28,     Score=315

KEGG

101740401    no KO assigned | (RefSeq) zinc finger protein 85-like

GO

GO:0008270   GO:0003676   GO:0005634   GO:0003677   GO:0016021   GO:0046872   GO:0005667   GO:0005737   GO:0004505   GO:0006559   GO:0004887  

Length:

553

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01079

Exp number, first 60 AAs:

0.00643

Total prob of N-in:

0.00343

outside

1  -  553

 

 

Pi

305.690778

Theta

223.156887

Tajima's D

1.172236

CLR

0

CSRT

0.707614619269037

Interpretation

Uncertain