HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	6.8	1.4	0.17	9.9	2	23	70	92
2	17.2	0.5	8.2e-05	0.0049	1	23	98	120
3	10.7	0.6	0.0092	0.55	3	23	128	148
4	12.5	0.0	0.0025	0.15	2	20	155	173
5	6.6	0.0	0.18	11	2	23	211	233
6	2.7	1.5	3.1	1.9e+02	2	23	240	261
7	9.0	0.4	0.032	1.9	3	23	269	289
8	8.3	0.0	0.052	3.1	3	21	297	315
9	12.8	0.3	0.002	0.12	3	23	333	353
10	12.4	2.5	0.0026	0.16	1	23	361	383
11	11.6	0.6	0.0048	0.29	1	23	388	410
12	5.3	2.8	0.47	28	1	12	416	427
13	18.9	0.4	2.3e-05	0.0014	1	23	444	466
14	11.2	0.3	0.0065	0.39	1	23	472	495

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.17
                   EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  2 kCpdCgksFkrksnLkrHirt.H 23
                   kC +C+  F +  +L++H +  H
  KWMTBOMO00682 70 KCLHCSVAFDSMNDLRNHSKFdH 92
                   8*****************87666 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 8.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC dC+++F++ s +  H r H
  KWMTBOMO00682  98 FKCADCDERFNTFSTFIEHVRGH 120
                    8********************99 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0092
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    Cp+C+k+F +  +  +H+  H
  KWMTBOMO00682 128 CPYCNKRFDDAGQCIAHLTEH 148
                    ***********9999999887 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.0025
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +Cp+Cg+ F+  ++L +H 
  KWMTBOMO00682 155 TCPYCGEIFPATDLLDTHK 173
                    8**************9996 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.18
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C dC k F     L++H ++ H
  KWMTBOMO00682 211 TCQDCFKGFEGVVPLRAHVQKeH 233
                    8*****************99988 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 3.1
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC dC++  ++   ++ H   H
  KWMTBOMO00682 240 KCMDCNRNMRNYAKFVEHVHQH 261
                    8*******99999999998877 PP

  == domain 7  score: 9.0 bits;  conditional E-value: 0.032
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C  C+k+ ++   Lk+Hi  H
  KWMTBOMO00682 269 CQFCNKRIPSEKKLKAHIEEH 289
                    9*****************998 PP

  == domain 8  score: 8.3 bits;  conditional E-value: 0.052
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C +Cg+ F ++  Lk+H+ 
  KWMTBOMO00682 297 CYGCGQIFEDNKILKKHML 315
                    99***************96 PP

  == domain 9  score: 12.8 bits;  conditional E-value: 0.002
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ Cgk+  ++  L++H  tH
  KWMTBOMO00682 333 CDQCGKVLATPARLRTHKLTH 353
                    *******************99 PP

  == domain 10  score: 12.4 bits;  conditional E-value: 0.0026
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+k F +k+nL+ H r H
  KWMTBOMO00682 361 FICDVCNKGFQSKENLRCHKRLH 383
                    78*******************99 PP

  == domain 11  score: 11.6 bits;  conditional E-value: 0.0048
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +C + F+ +  L  H+++H
  KWMTBOMO00682 388 HVCRICQRAFSLQLALLEHLSKH 410
                    79*******************99 PP

  == domain 12  score: 5.3 bits;  conditional E-value: 0.47
                    EEETTTTEEESS CS
        zf-C2H2   1 ykCpdCgksFkr 12 
                    ++C++Cgk+F +
  KWMTBOMO00682 416 FECDHCGKRFWS 427
                    89*******955 PP

  == domain 13  score: 18.9 bits;  conditional E-value: 2.3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgk F+ + +L++H r H
  KWMTBOMO00682 444 FVCKTCGKGFRFNNLLVAHERQH 466
                    89*******************99 PP

  == domain 14  score: 11.2 bits;  conditional E-value: 0.0065
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C  C + F+ + +L++H+   H
  KWMTBOMO00682 472 HVCALCRRAFTIRPLLNKHMVAvH 495
                    79******************7655 PP