HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.0	0.4	0.0036	0.22	3	23	194	215
2	10.1	0.0	0.015	0.89	3	21	280	298
3	19.6	1.4	1.4e-05	0.00082	2	23	323	344
4	23.8	1.3	6.6e-07	4e-05	1	23	352	374
5	11.9	1.8	0.0039	0.24	1	23	380	402
6	18.5	1.3	3e-05	0.0018	1	23	408	430
7	12.9	1.6	0.0018	0.11	1	23	436	458
8	22.4	3.2	1.8e-06	0.00011	1	23	464	487

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0036
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C++C+  F + ++L++H +  H
  KWMTBOMO00681 194 CSHCNIEFINIDMLRSHSKLvH 215
                    *****************99888 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.015
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C  Cg+  ++k+nL+ H++
  KWMTBOMO00681 280 CQLCGEILSDKHNLEIHLQ 298
                    *****************85 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.4e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+k++k+  +L+ H++ H
  KWMTBOMO00681 323 TCSICKKVYKNTNSLRDHMKLH 344
                    8*******************99 PP

  == domain 4  score: 23.8 bits;  conditional E-value: 6.6e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cgk+F +k  L++Hi+tH
  KWMTBOMO00681 352 YTCDRCGKMFYNKGTLTSHIMTH 374
                    9*********************9 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.0039
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C +C++sF  + +L+rH  +H
  KWMTBOMO00681 380 HICRICNRSFLFPNMLRRHVEMH 402
                    67*****************9998 PP

  == domain 6  score: 18.5 bits;  conditional E-value: 3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ Cg++F+ +++L++H  +H
  KWMTBOMO00681 408 YSCEQCGRCFRLPYQLNAHKIVH 430
                    89*****************9988 PP

  == domain 7  score: 12.9 bits;  conditional E-value: 0.0018
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +C+k F+ k  Lk+H r H
  KWMTBOMO00681 436 YICQYCNKAFRFKQILKNHERQH 458
                    89******************999 PP

  == domain 8  score: 22.4 bits;  conditional E-value: 1.8e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C  C++ F+++sn+++H+++ H
  KWMTBOMO00681 464 YSCQFCSMEFTNWSNYNKHMKRrH 487
                    89********************99 PP