HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.7	0.9	0.081	4.9	2	23	15	35
2	18.6	0.3	2.9e-05	0.0017	1	23	41	62
3	14.4	1.6	0.00061	0.036	1	23	68	90
4	17.0	2.1	9.1e-05	0.0055	1	23	96	118
5	12.2	1.0	0.003	0.18	1	23	124	147
6	12.8	0.2	0.002	0.12	1	23	153	176

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.081
                   EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  2 kCpdCgksFkrksnLkrHirtH 23
                   +C+ C+    r++++++H+++H
  KWMTBOMO15608 15 QCNLCKAII-RSDSYQKHLMRH 35
                   688888444.566666666555 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.9e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C++Cgk + rk+nL rH++ H
  KWMTBOMO15608 41 FVCEVCGKLY-RKDNLIRHLQLH 62
                   89********.**********99 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 0.00061
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C +C+++ +  ++Lk H+rtH
  KWMTBOMO15608 68 HVCQICPYRGRFYESLKIHLRTH 90
                   79********************9 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 9.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+ +F ++snL+rH+ tH
  KWMTBOMO15608  96 FSCDKCSLRFLTRSNLNRHLLTH 118
                    89********************9 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 0.003
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC +C++sF  k ++++H +  H
  KWMTBOMO15608 124 FKCLECSRSFYLKRDMEAHFKAdH 147
                    8******************88777 PP

  == domain 6  score: 12.8 bits;  conditional E-value: 0.002
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cg ++ +k  L+rH  + H
  KWMTBOMO15608 153 FVCDACGNKYGTKKALMRHELRvH 176
                    89*****************99988 PP