HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	17.0	7.7	9.1e-05	0.0054	1	23	193	215
2	22.3	0.8	2e-06	0.00012	3	23	229	249
3	17.6	2.1	5.9e-05	0.0036	2	23	258	279
4	17.2	2.2	7.7e-05	0.0046	1	23	285	307
5	23.1	1.5	1.1e-06	6.5e-05	1	23	313	335
6	18.3	8.2	3.5e-05	0.0021	2	23	342	363
7	19.8	0.8	1.2e-05	0.00074	1	23	369	391
8	22.0	0.4	2.4e-06	0.00015	1	23	397	419
9	15.9	1.3	0.00021	0.013	1	23	425	447
10	15.3	2.0	0.00031	0.019	1	23	453	475
11	20.5	1.7	7e-06	0.00042	1	23	481	503
12	16.5	4.2	0.00013	0.008	1	23	509	531

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+k Fk++  Lk+H+r+H
  KWMTBOMO09828 193 HVCNLCHKEFKHSRWLKQHMRSH 215
                    79********************9 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 2e-06
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C ++Fk + +Lk H+rtH
  KWMTBOMO09828 229 CTICERTFKGPGMLKMHMRTH 249
                    ********************9 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 5.9e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C ++F +k +L rH++tH
  KWMTBOMO09828 258 TCSVCQRTFATKTLLYRHRQTH 279
                    7********************9 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 7.7e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C k+F + + L++H+ +H
  KWMTBOMO09828 285 HQCTVCEKRFYSGYALRSHMARH 307
                    79********************9 PP

  == domain 5  score: 23.1 bits;  conditional E-value: 1.1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C+ksF ++ +Lk+H r H
  KWMTBOMO09828 313 YVCSMCNKSFYNPTDLKVHFRLH 335
                    9********************99 PP

  == domain 6  score: 18.3 bits;  conditional E-value: 3.5e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC++C+++F+r s L++H+++H
  KWMTBOMO09828 342 KCTECNRTFRRHSTLCQHMKKH 363
                    8********************9 PP

  == domain 7  score: 19.8 bits;  conditional E-value: 1.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+k F   s L++H+r+H
  KWMTBOMO09828 369 HVCNVCNKAFYEVSKLNAHMRVH 391
                    79********************9 PP

  == domain 8  score: 22.0 bits;  conditional E-value: 2.4e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +Cg++F ++s L  H r+H
  KWMTBOMO09828 397 YECQYCGRRFAQQSALIYHNRIH 419
                    99*******************99 PP

  == domain 9  score: 15.9 bits;  conditional E-value: 0.00021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+ +F+++s  ++H+ tH
  KWMTBOMO09828 425 YSCKLCSAKFTTSSARNNHMITH 447
                    89********************9 PP

  == domain 10  score: 15.3 bits;  conditional E-value: 0.00031
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C k +++k +L++Hi +H
  KWMTBOMO09828 453 YICSICYKGCTSKTELRVHITKH 475
                    89*******************99 PP

  == domain 11  score: 20.5 bits;  conditional E-value: 7e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+++F++ s L +H+r H
  KWMTBOMO09828 481 FECTYCSQRFSSASYLAVHRRYH 503
                    89*******************99 PP

  == domain 12  score: 16.5 bits;  conditional E-value: 0.00013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C +CgksF    ++k+H+++H
  KWMTBOMO09828 509 HHCQICGKSFIEARSYKKHMSSH 531
                    67*******************99 PP