Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
---|---|---|---|---|---|
KWMTBOMO00511 | zf-C2H2 | 1.8e-12 | 0.00027 | 7 | + View |
HMM length of domain: 23 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 9.0 0.8 0.033 2 1 23 17 39 2 5.5 2.0 0.41 24 2 23 196 218 3 12.1 2.7 0.0032 0.19 1 23 442 466 4 5.5 6.4 0.4 24 1 23 922 945 5 11.9 0.8 0.0038 0.23 1 23 951 973 6 21.1 6.7 4.5e-06 0.00027 1 23 979 1001 7 16.2 3.0 0.00017 0.01 1 23 1007 1029 Alignments for each domain: == domain 1 score: 9.0 bits; conditional E-value: 0.033 EEETTTTEEESSHHHHHHHHHCC CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 y C++C+ + ++L++H++ H KWMTBOMO00511 17 YHCKVCDLYLDTLDSLEVHLQYH 39 89******************999 PP == domain 2 score: 5.5 bits; conditional E-value: 0.41 EETTTTEEESSHHHHHHHHHC.C CS zf-C2H2 2 kCpdCgksFkrksnLkrHirt.H 23 +C++Cg ++ + +L+ H +t H KWMTBOMO00511 196 QCDKCGFVCDSAVQLNEHCNTaH 218 7*****************77777 PP == domain 3 score: 12.1 bits; conditional E-value: 0.0032 EEETTTTEEESSHHHHHHHHHC..C CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirt..H 23 y C+ C+k F+++ +LkrH++t H KWMTBOMO00511 442 YNCTACNKWFTSSGHLKRHYNTtlH 466 89******************98666 PP == domain 4 score: 5.5 bits; conditional E-value: 0.4 EEETTTTEEESSHHHHHHHHHC.C CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirt.H 23 +kC +C+k F+ L++H +t H KWMTBOMO00511 922 HKCYECDKLFNKACYLTQHNKTfH 945 79*****************99999 PP == domain 5 score: 11.9 bits; conditional E-value: 0.0038 EEETTTTEEESSHHHHHHHHHCC CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 +kC+ Cgk+F++ +++ H+ +H KWMTBOMO00511 951 FKCDRCGKRFSDDVSYEGHYIKH 973 8******************9999 PP == domain 6 score: 21.1 bits; conditional E-value: 4.5e-06 EEETTTTEEESSHHHHHHHHHCC CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 +kC++C+ksF++k +L+rH++ H KWMTBOMO00511 979 FKCSECPKSFNHKTDLRRHMCLH 1001 8********************99 PP == domain 7 score: 16.2 bits; conditional E-value: 0.00017 EEETTTTEEESSHHHHHHHHHCC CS zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23 + C++Cgk F rk+++++H tH KWMTBOMO00511 1007 FACDHCGKGFIRKDHMVKHFDTH 1029 78*****************9998 PP |
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