HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	11.3	0.5	0.006	0.36	1	21	165	185
2	5.1	0.5	0.56	34	2	20	200	218
3	14.9	0.8	0.00043	0.026	3	23	263	283
4	8.1	0.0	0.06	3.6	2	20	385	403
5	14.1	1.0	0.00075	0.045	1	23	413	436
6	17.6	0.8	6e-05	0.0036	1	23	458	480
7	25.4	1.9	2e-07	1.2e-05	1	23	487	509
8	27.2	2.6	5.3e-08	3.1e-06	3	23	523	543
9	18.1	3.4	4.3e-05	0.0026	1	23	549	571
10	24.8	1.8	3.1e-07	1.9e-05	2	23	578	599
11	25.7	1.4	1.6e-07	9.5e-06	1	23	605	627
12	9.5	0.1	0.022	1.3	1	23	633	655

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.006
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    ++C+ C  +F ++s L+ H +
  KWMTBOMO00352 165 FECKNCLLVFESQSKLQEHKK 185
                    89*****************87 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.56
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +Cp Cg ++   ++  +H+
  KWMTBOMO00352 200 YCPLCGTCYDGAESWSKHL 218
                    6*********999999996 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 0.00043
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ C+k F++k++L++H   H
  KWMTBOMO00352 263 CSFCTKNFNTKEELTSHFIEH 283
                    *****************8877 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.06
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +C+ C+k+F +  +  rH+
  KWMTBOMO00352 385 RCNLCTKVFASIKSAARHR 403
                    8*********999999996 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 0.00075
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cg +F    +L++Hi + H
  KWMTBOMO00352 413 HECTTCGLKFAYEISLNKHILKyH 436
                    78*******************999 PP

  == domain 6  score: 17.6 bits;  conditional E-value: 6e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C++ F rk++L +H r+H
  KWMTBOMO00352 458 YQCDTCSRLFFRKELLAKHARIH 480
                    9********************99 PP

  == domain 7  score: 25.4 bits;  conditional E-value: 2e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C k+F+rk+nL++H r+H
  KWMTBOMO00352 487 FQCDICEKKFTRKDNLRSHKRIH 509
                    89*******************99 PP

  == domain 8  score: 27.2 bits;  conditional E-value: 5.3e-08
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +Cg+sF+++snL +H+r+H
  KWMTBOMO00352 523 CLYCGRSFSNSSNLIVHMRRH 543
                    78******************9 PP

  == domain 9  score: 18.1 bits;  conditional E-value: 4.3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ Cgk F+r+s+L+ H+r+H
  KWMTBOMO00352 549 YKCDFCGKGFPRSSDLQCHRRSH 571
                    9*********************9 PP

  == domain 10  score: 24.8 bits;  conditional E-value: 3.1e-07
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++Cgk F+r+  L+rH+r+H
  KWMTBOMO00352 578 VCGVCGKGFSRSNKLTRHMRVH 599
                    8********************9 PP

  == domain 11  score: 25.7 bits;  conditional E-value: 1.6e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C k F+++ +L+ Hir+H
  KWMTBOMO00352 605 YKCTYCEKAFSQSNDLTLHIRRH 627
                    9*********************9 PP

  == domain 12  score: 9.5 bits;  conditional E-value: 0.022
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cg +F +   L++H+r H
  KWMTBOMO00352 633 YICEVCGDRFIQGTALQNHRRAH 655
                    89*******************99 PP