SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00352
Pre Gene Modal
BGIBMGA000521
Annotation
PREDICTED:_zinc_finger_protein_271-like_isoform_X2_[Bombyx_mori]
Full name
Zinc finger protein      
Transcription factor
Location in the cell
Nuclear   Reliability : 4.592
 

Sequence

CDS
ATGACTTCAGGACATTGCAAATCTGAAGTCAAAGCTGAAAAGCTTTGCCGAACATGCCTGTCTAAGGATAACCAATTCCATTCATTGTTTGAAGTATTAGTAGGAACAGTTACACTAGATTCGGTAGTATCGGAAATAACCGGATTAGAGATTCGCAAGGGAGATGGACTCCCTTCTACAATATGTGATGATTGCAGAGAAAAGGCAGAGATTGCTTATTATTTCAAAAAGAAATCGCATGACGCTCATAACTCCTTGAAAGATCAACTAAAAAGAGAAAAAAATGAAAACTGTTTACAACAGAAACAACAAGTTAATAAGTTAGCAACTGTTACCAGTGTCAAAGTTGAACACATCACATCCCAAGATAATGAAGATTTCTCAGATTCAGAATTCGATGTTCTTCTTGCTAGTGAATCTGATAATTTGACAGAAATAGATCTTGAGCCAGTTAAGAATGAGAAATCAGCACAAGAAACACATCCATCCTATTTTGAATGTAAAAATTGTTTATTGGTGTTTGAATCTCAATCAAAATTACAAGAACACAAGAAGAAAAAATGCATAAAAGTTGAGTTGGATGAATCTGGTGGGACTTATTGCCCTCTTTGTGGAACATGCTATGATGGAGCTGAAAGTTGGTCCAAACATTTGTGGGAGTCTCATGCTGAAGTTATGGGACCAAAGAAAAGAGGACGTCCTAAGAAAATGTTAACAAGTTCAATTCTGGATAAATTGTCAGAGAATGGATTCTTTATAACAACTGTTCCTACCAAAAAGCTAGACTGCTCATTCTGTACTAAAAATTTTAACACCAAAGAAGAACTGACCAGTCATTTCATCGAACACAAAGGTATGAAGGTACTGTGTTGCATAATGTGTAAAAAAATGTTTTTGAAGAAAGAAAACTTTCAAGAACATTTGTGTATTGAAGACCGTAACGAAAATAAGAAGCCAGATGATGCTAATGATATGCAAGCTACAAAGAAATGGAATTATCTAACTGAAATGCTATTACAAGATCTGTTGGAGCCAAATTGTGAAATGGAAAACGTTGATGTTCTAAAAGTGTGTACTGCATGTAGTGCGATTTATCTTTCTGATGAAGATCTTGTGAACCACCATGATGCTGAACATCCGGAGCTTTCCCTTCGTTGTAATCTGTGCACAAAGGTTTTTGCATCTATAAAATCAGCAGCAAGACACAGAGCAATCTGCAAACAGGTTGAAAAGACACATGAATGCACTACATGCGGATTGAAATTCGCATATGAGATTTCATTGAATAAACACATTCTTAAATATCATCAAGGGCAGAGTGTGTCTATAACATTTGAGGATACAGCTCCGAAAGGTGAAGAAGATAAACAGTATCAATGTGATACTTGCAGCAGACTGTTCTTCAGAAAAGAATTATTAGCCAAGCATGCCAGGATACACATGCCAAATCAAAAATATTTTCAATGTGACATATGTGAAAAGAAATTCACAAGGAAAGATAATTTACGGTCGCACAAGCGTATCCATGATCCGCATCGTGAAAAAGGCCCATCGAATACATGTTTATGCTTGTATTGTGGTCGGAGTTTCTCCAATTCATCCAATTTAATAGTCCATATGCGTCGGCACACGGGCGAGAAGCCATACAAATGTGATTTTTGTGGGAAAGGTTTTCCACGATCATCAGATCTACAGTGTCATCGAAGATCTCACACCGGTGAAAAGCCCTGCGTTTGTGGTGTTTGCGGAAAAGGGTTCTCCCGCAGCAACAAGTTGACACGTCACATGCGCGTTCACACTGGTGTCAGACCGTACAAGTGTACCTACTGCGAGAAGGCGTTCTCACAGAGCAACGATTTGACCTTGCACATCCGGAGGCACACTGGAGACCGTCCTTACATATGCGAAGTCTGCGGAGACAGATTCATTCAGGGCACAGCACTGCAGAATCACCGAAGAGCCCACGGGCATTTCCGCAACCCGACAAACGATGTCCAGACGCAAGTGCAAGGTTTACAGTATAGTGTACAAAATGTTTCTCAGAACAGTCATTAA
Protein
MTSGHCKSEVKAEKLCRTCLSKDNQFHSLFEVLVGTVTLDSVVSEITGLEIRKGDGLPSTICDDCREKAEIAYYFKKKSHDAHNSLKDQLKREKNENCLQQKQQVNKLATVTSVKVEHITSQDNEDFSDSEFDVLLASESDNLTEIDLEPVKNEKSAQETHPSYFECKNCLLVFESQSKLQEHKKKKCIKVELDESGGTYCPLCGTCYDGAESWSKHLWESHAEVMGPKKRGRPKKMLTSSILDKLSENGFFITTVPTKKLDCSFCTKNFNTKEELTSHFIEHKGMKVLCCIMCKKMFLKKENFQEHLCIEDRNENKKPDDANDMQATKKWNYLTEMLLQDLLEPNCEMENVDVLKVCTACSAIYLSDEDLVNHHDAEHPELSLRCNLCTKVFASIKSAARHRAICKQVEKTHECTTCGLKFAYEISLNKHILKYHQGQSVSITFEDTAPKGEEDKQYQCDTCSRLFFRKELLAKHARIHMPNQKYFQCDICEKKFTRKDNLRSHKRIHDPHREKGPSNTCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCGVCGKGFSRSNKLTRHMRVHTGVRPYKCTYCEKAFSQSNDLTLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFRNPTNDVQTQVQGLQYSVQNVSQNSH

Summary

EC Number
2.1.1.-
Pfam
PF16622   zf-C2H2_11        + More
PF00096   zf-C2H2
PF07776   zf-AD
PF01352   KRAB
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR041697   Znf-C2H2_11       
IPR012934   Znf_AD       
IPR017125   Znf_PRDM5-like       
IPR017921   Znf_CTCHY       
IPR036051   KRAB_dom_sf       
IPR003656   Znf_BED       
IPR001909   KRAB       
SUPFAM
SSF57667   SSF57667        + More
SSF109640   SSF109640       
PDB
5WJQ     E-value=7.43454e-38,     Score=397

Ontologies

Topology

Length:
684
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.07968
Exp number, first 60 AAs:
0.07968
Total prob of N-in:
0.00414
outside
1  -  684
 
 

Population Genetic Test Statistics

Pi
0.394124
Theta
13.522629
Tajima's D
-2.142063
CLR
13.29104
CSRT
0.00684965751712414
Interpretation
Possibly Positive selection
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