Gene

KWMTBOMO00352

Pre Gene Modal

BGIBMGA000521

Annotation

PREDICTED:_zinc_finger_protein_271-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr1(-):10573045-10581552      View in EpiBrowser

Full name

Zinc finger protein      

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.592

CDS

ATGACTTCAGGACATTGCAAATCTGAAGTCAAAGCTGAAAAGCTTTGCCGAACATGCCTGTCTAAGGATAACCAATTCCATTCATTGTTTGAAGTATTAGTAGGAACAGTTACACTAGATTCGGTAGTATCGGAAATAACCGGATTAGAGATTCGCAAGGGAGATGGACTCCCTTCTACAATATGTGATGATTGCAGAGAAAAGGCAGAGATTGCTTATTATTTCAAAAAGAAATCGCATGACGCTCATAACTCCTTGAAAGATCAACTAAAAAGAGAAAAAAATGAAAACTGTTTACAACAGAAACAACAAGTTAATAAGTTAGCAACTGTTACCAGTGTCAAAGTTGAACACATCACATCCCAAGATAATGAAGATTTCTCAGATTCAGAATTCGATGTTCTTCTTGCTAGTGAATCTGATAATTTGACAGAAATAGATCTTGAGCCAGTTAAGAATGAGAAATCAGCACAAGAAACACATCCATCCTATTTTGAATGTAAAAATTGTTTATTGGTGTTTGAATCTCAATCAAAATTACAAGAACACAAGAAGAAAAAATGCATAAAAGTTGAGTTGGATGAATCTGGTGGGACTTATTGCCCTCTTTGTGGAACATGCTATGATGGAGCTGAAAGTTGGTCCAAACATTTGTGGGAGTCTCATGCTGAAGTTATGGGACCAAAGAAAAGAGGACGTCCTAAGAAAATGTTAACAAGTTCAATTCTGGATAAATTGTCAGAGAATGGATTCTTTATAACAACTGTTCCTACCAAAAAGCTAGACTGCTCATTCTGTACTAAAAATTTTAACACCAAAGAAGAACTGACCAGTCATTTCATCGAACACAAAGGTATGAAGGTACTGTGTTGCATAATGTGTAAAAAAATGTTTTTGAAGAAAGAAAACTTTCAAGAACATTTGTGTATTGAAGACCGTAACGAAAATAAGAAGCCAGATGATGCTAATGATATGCAAGCTACAAAGAAATGGAATTATCTAACTGAAATGCTATTACAAGATCTGTTGGAGCCAAATTGTGAAATGGAAAACGTTGATGTTCTAAAAGTGTGTACTGCATGTAGTGCGATTTATCTTTCTGATGAAGATCTTGTGAACCACCATGATGCTGAACATCCGGAGCTTTCCCTTCGTTGTAATCTGTGCACAAAGGTTTTTGCATCTATAAAATCAGCAGCAAGACACAGAGCAATCTGCAAACAGGTTGAAAAGACACATGAATGCACTACATGCGGATTGAAATTCGCATATGAGATTTCATTGAATAAACACATTCTTAAATATCATCAAGGGCAGAGTGTGTCTATAACATTTGAGGATACAGCTCCGAAAGGTGAAGAAGATAAACAGTATCAATGTGATACTTGCAGCAGACTGTTCTTCAGAAAAGAATTATTAGCCAAGCATGCCAGGATACACATGCCAAATCAAAAATATTTTCAATGTGACATATGTGAAAAGAAATTCACAAGGAAAGATAATTTACGGTCGCACAAGCGTATCCATGATCCGCATCGTGAAAAAGGCCCATCGAATACATGTTTATGCTTGTATTGTGGTCGGAGTTTCTCCAATTCATCCAATTTAATAGTCCATATGCGTCGGCACACGGGCGAGAAGCCATACAAATGTGATTTTTGTGGGAAAGGTTTTCCACGATCATCAGATCTACAGTGTCATCGAAGATCTCACACCGGTGAAAAGCCCTGCGTTTGTGGTGTTTGCGGAAAAGGGTTCTCCCGCAGCAACAAGTTGACACGTCACATGCGCGTTCACACTGGTGTCAGACCGTACAAGTGTACCTACTGCGAGAAGGCGTTCTCACAGAGCAACGATTTGACCTTGCACATCCGGAGGCACACTGGAGACCGTCCTTACATATGCGAAGTCTGCGGAGACAGATTCATTCAGGGCACAGCACTGCAGAATCACCGAAGAGCCCACGGGCATTTCCGCAACCCGACAAACGATGTCCAGACGCAAGTGCAAGGTTTACAGTATAGTGTACAAAATGTTTCTCAGAACAGTCATTAA

Protein

MTSGHCKSEVKAEKLCRTCLSKDNQFHSLFEVLVGTVTLDSVVSEITGLEIRKGDGLPSTICDDCREKAEIAYYFKKKSHDAHNSLKDQLKREKNENCLQQKQQVNKLATVTSVKVEHITSQDNEDFSDSEFDVLLASESDNLTEIDLEPVKNEKSAQETHPSYFECKNCLLVFESQSKLQEHKKKKCIKVELDESGGTYCPLCGTCYDGAESWSKHLWESHAEVMGPKKRGRPKKMLTSSILDKLSENGFFITTVPTKKLDCSFCTKNFNTKEELTSHFIEHKGMKVLCCIMCKKMFLKKENFQEHLCIEDRNENKKPDDANDMQATKKWNYLTEMLLQDLLEPNCEMENVDVLKVCTACSAIYLSDEDLVNHHDAEHPELSLRCNLCTKVFASIKSAARHRAICKQVEKTHECTTCGLKFAYEISLNKHILKYHQGQSVSITFEDTAPKGEEDKQYQCDTCSRLFFRKELLAKHARIHMPNQKYFQCDICEKKFTRKDNLRSHKRIHDPHREKGPSNTCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCGVCGKGFSRSNKLTRHMRVHTGVRPYKCTYCEKAFSQSNDLTLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFRNPTNDVQTQVQGLQYSVQNVSQNSH

Uniprot

H9ITE1   A0A2H1W5B4   A0A1E1WNE7   A0A212EY58   A0A0L7LCC3   A0A194QWE0   + More
A0A194PY76   A0A1L8DIX4   Q0IED6   A0A1Q3G0Y9   U5ESF2   A0A0K8TL59   U5ERL6   A0A1W4XLX6   A0A1Y1L6A6   A0A1Y1L696   A0A1W4XBI2   D6WMW1   A0A1W4VKQ6   Q296N5   Q29QW3   Q9VBR8   Q8SZ64   A0A3B0KGT2   A0A3B0K891   N6UDH1   B0WQZ3   A0A0K8UMF0   A0A0K8V6K3   A0A0A1WZI8   A0A1I8NBI1   A0A1I8NBI7   A0A1A9VPJ2   A0A0L8GUN8   A0A0L8HUE1   A0A1U8DNU0   A0A0L8HAP0   H9H871   A0A0L8FIK4  

EC Number

2.1.1.-

Pubmed

19121390    22118469    26227816    26354079    17510324    26369729    + More
28004739    18362917    19820115    15632085    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    23537049    25830018    25315136    17495919   

EMBL

BABH01007129    ODYU01006417    SOQ48238.1    GDQN01002530    JAT88524.1    AGBW02011631    + More
OWR46384.1    JTDY01001736    KOB73040.1    KQ461108    KPJ09280.1    KQ459594    KPI96100.1    GFDF01007703    JAV06381.1    CH477695    EAT37163.1    GFDL01001587    JAV33458.1    GANO01003272    JAB56599.1    GDAI01002524    JAI15079.1    GANO01003692    JAB56179.1    GEZM01063200    JAV69202.1    GEZM01063199    JAV69203.1    KQ971343    EFA03275.1    CM000070    EAL28422.3    BT024277    ABC86339.1    AE014297    AAF56460.2    AY071090    AAL48712.2    OUUW01000008    SPP84301.1    SPP84300.1    APGK01032711    KB740848    ENN78671.1    DS232047    EDS33080.1    GDHF01024430    JAI27884.1    GDHF01017813    JAI34501.1    GBXI01010509    JAD03783.1    KQ420308    KOF80673.1    KQ417280    KOF92814.1    KQ418671    KOF86356.1    KQ430873    KOF63561.1   

Proteomes

UP000005204    UP000007151    UP000037510    UP000053240    UP000053268    UP000008820    + More
UP000192223    UP000007266    UP000192221    UP000001819    UP000000803    UP000268350    UP000019118    UP000002320    UP000095301    UP000078200    UP000053454    UP000189705    UP000002280   

PRIDE

H9ITE1    Q29QW3    Q9VBR8    Q8SZ64   

Pfam

PF16622   zf-C2H2_11        + More
PF00096   zf-C2H2
PF07776   zf-AD
PF01352   KRAB

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR041697   Znf-C2H2_11       
IPR012934   Znf_AD       
IPR017125   Znf_PRDM5-like       
IPR017921   Znf_CTCHY       
IPR036051   KRAB_dom_sf       
IPR003656   Znf_BED       
IPR001909   KRAB       

SUPFAM

SSF57667   SSF57667        + More
SSF109640   SSF109640       

CDD

cd07765  KRAB_A-box

ProteinModelPortal

H9ITE1   A0A2H1W5B4   A0A1E1WNE7   A0A212EY58   A0A0L7LCC3   A0A194QWE0   + More
A0A194PY76   A0A1L8DIX4   Q0IED6   A0A1Q3G0Y9   U5ESF2   A0A0K8TL59   U5ERL6   A0A1W4XLX6   A0A1Y1L6A6   A0A1Y1L696   A0A1W4XBI2   D6WMW1   A0A1W4VKQ6   Q296N5   Q29QW3   Q9VBR8   Q8SZ64   A0A3B0KGT2   A0A3B0K891   N6UDH1   B0WQZ3   A0A0K8UMF0   A0A0K8V6K3   A0A0A1WZI8   A0A1I8NBI1   A0A1I8NBI7   A0A1A9VPJ2   A0A0L8GUN8   A0A0L8HUE1   A0A1U8DNU0   A0A0L8HAP0   H9H871   A0A0L8FIK4  

PDB

5WJQ     E-value=7.43454e-38,     Score=397

KEGG

101743555    no KO assigned | (RefSeq) zinc finger protein 271-like

GO

GO:0003676   GO:0008270   GO:0005634   GO:0006355   GO:0003700   GO:0046872   GO:0000976   GO:0003677   GO:0030286   GO:0006813   GO:0006810   GO:0009072   GO:0007169   GO:0016021  

Length:

684

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07968

Exp number, first 60 AAs:

0.07968

Total prob of N-in:

0.00414

outside

1  -  684

 

 

Pi

0.394124

Theta

13.522629

Tajima's D

-2.142063

CLR

13.29104

CSRT

0.00684965751712414

Interpretation

Possibly Positive selection