Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO00151	RXR-like	2.7e-43	4.7e-43	1	+ View
HMM length of domain: 202 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 147.3 0.1 4.7e-46 4.7e-43 2 198 181 378 Alignments for each domain: == domain 1 score: 147.3 bits; conditional E-value: 4.7e-46 RXR-like 2 cetaarlLfllVewaksipafseLpledqviLLrasWaelliLalaqtsiplsdaqlllasglsvarnsaekevekildleevrvLqelvtklrdl 97 ce+aarlLf++V+wak++paf+ L+l+d++ LL++sW++l+i++ aq pl+++ +l n+ + d+++v +++ + ++ ++ KWMTBOMO00151 181 CEAAARLLFMNVKWAKNVPAFASLSLPDRLLLLEESWKDLFIIGSAQFLYPLDLK-ILSE------GNA-------RIDSRDVEMFETSLAEIVKV 262 ****************************************************9.3322......222.......244456799******* PP RXR-like 98 qldatEyacLkaIvlfnpdt...............daagleerskieslrekvqasleeyiqdqypeqpgrFgklLlrLpalrsissktieelffs 178 + d++EyacL+aIvlf+ + + + l++ +++l++++q l+ey++++yp +p r++++L++Lp + +s +i elff+ KWMTBOMO00151 263 HPDSNEYACLRAIVLFKTSFvdvnilcrgqsqigsEYKRLQDLPAVAALQDHSQLVLNEYTTRTYPLDPSRLSQILQLLPVIKRVSNLIIVELFFR 358 **************88*****999999999999999************************************************ PP RXR-like 179 kliGdtpietlllemlessk 198 +iG++pie+++ +m++++k KWMTBOMO00151 359 ATIGEIPIERIIGDMYRTTK 378 **************9876 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO00151

RXR-like

2.7e-43

4.7e-43

+ View

						  HMM length of domain: 202 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	147.3	0.1	4.7e-46	4.7e-43	2	198	181	378

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 4.7e-46
       RXR-like   2 cetaarlLfllVewaksipafseLpledqviLLrasWaelliLalaqtsiplsdaqlllasglsvarnsaekevekildleevrvLqelvtklrdl 97 
                    ce+aarlLf++V+wak++paf+ L+l+d++ LL++sW++l+i++ aq   pl+++ +l         n+       + d+++v +++  + ++ ++
  KWMTBOMO00151 181 CEAAARLLFMNVKWAKNVPAFASLSLPDRLLLLEESWKDLFIIGSAQFLYPLDLK-ILSE------GNA-------RIDSRDVEMFETSLAEIVKV 262
                    ******************************************************9.3322......222.......244456799*********** PP

       RXR-like  98 qldatEyacLkaIvlfnpdt...............daagleerskieslrekvqasleeyiqdqypeqpgrFgklLlrLpalrsissktieelffs 178
                    + d++EyacL+aIvlf+ +                + + l++   +++l++++q  l+ey++++yp +p r++++L++Lp  + +s  +i elff+
  KWMTBOMO00151 263 HPDSNEYACLRAIVLFKTSFvdvnilcrgqsqigsEYKRLQDLPAVAALQDHSQLVLNEYTTRTYPLDPSRLSQILQLLPVIKRVSNLIIVELFFR 358
                    ******************88*********999999999999999**************************************************** PP

       RXR-like 179 kliGdtpietlllemlessk 198
                     +iG++pie+++ +m++++k
  KWMTBOMO00151 359 ATIGEIPIERIIGDMYRTTK 378
                    ****************9876 PP