HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	5.7	3.3	0.37	22	1	23	273	295
2	15.0	0.7	0.00039	0.023	2	23	303	324
3	6.6	1.0	0.19	12	1	23	328	350
4	5.3	3.0	0.47	28	1	23	355	378
5	7.6	0.0	0.09	5.4	1	23	382	405
6	8.1	0.2	0.06	3.6	3	22	418	437
7	7.9	0.0	0.074	4.4	2	20	448	466
8	4.0	0.0	1.2	73	3	23	498	519
9	17.4	1.0	6.9e-05	0.0041	1	19	530	548
10	11.1	1.9	0.0072	0.43	1	23	558	580
11	12.4	1.4	0.0026	0.16	1	21	586	606
12	19.8	0.4	1.2e-05	0.00074	1	23	614	637

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.37
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC  C k F +++  ++H+++H
  KWMTBOMO12729 273 HKCQLCYKGFLNNDAWNHHLSKH 295
                    79********************9 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 0.00039
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +Cp+C+ +Fk++ nL rH   H
  KWMTBOMO12729 303 QCPVCKLRFKTRQNLYRHGINH 324
                    8*****************8777 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.19
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+ + ++  + k H+r H
  KWMTBOMO12729 328 YICKRCNHVATTANQAKMHQRWH 350
                    89*******************99 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.47
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ Cg++ +   +  +H r+ H
  KWMTBOMO12729 355 YTCHLCGEVSTKYTSHLSHVRIkH 378
                    9******88877777777777766 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.09
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cg sF ++  L  H+ + H
  KWMTBOMO12729 382 FVCGACGSSFVSRLGLAMHRAVmH 405
                    89*****************99888 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.06
                    ETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt 22 
                    C +C+ +F ++  + +H+ t
  KWMTBOMO12729 418 CAECDLRFASRAAYSKHLLT 437
                    9****************976 PP

  == domain 7  score: 7.9 bits;  conditional E-value: 0.074
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    kC +C+ sF ++  L+ H 
  KWMTBOMO12729 448 KCRICDGSFESSQALQDHV 466
                    7*****************6 PP

  == domain 8  score: 4.0 bits;  conditional E-value: 1.2
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ C++   +  ++ +H r+ H
  KWMTBOMO12729 498 CEQCPEQVGSARDYWNHFRRaH 519
                    *******************999 PP

  == domain 9  score: 17.4 bits;  conditional E-value: 6.9e-05
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    ++C++Cg+ F+rks+L+ H
  KWMTBOMO12729 530 HVCDVCGRGFRRKSMLVYH 548
                    79***************99 PP

  == domain 10  score: 11.1 bits;  conditional E-value: 0.0072
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ Cgk F ++  L  H+r H
  KWMTBOMO12729 558 FKCETCGKAFQHPNGLYFHRRWH 580
                    8***************9999988 PP

  == domain 11  score: 12.4 bits;  conditional E-value: 0.0026
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    + Cp+C+k F +k  L+rH+r
  KWMTBOMO12729 586 FSCPVCPKAFLDKFGLERHLR 606
                    89*****************98 PP

  == domain 12  score: 19.8 bits;  conditional E-value: 1.2e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C  C++ F+++ +Lk Hi++ H
  KWMTBOMO12729 614 YRCQLCDRAFSQSNSLKGHIQSvH 637
                    9********************999 PP