HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.7	6.2	0.0021	0.13	1	23	157	179
2	17.5	0.6	6.4e-05	0.0039	1	23	185	207
3	16.1	2.1	0.00018	0.011	1	23	213	236
4	6.9	3.4	0.14	8.6	1	21	242	262
5	17.4	3.3	6.8e-05	0.0041	1	23	270	292
6	17.5	5.0	6.3e-05	0.0038	1	23	298	320
7	11.1	0.9	0.0068	0.4	1	23	328	351
8	9.3	5.3	0.026	1.5	2	23	358	379
9	16.7	2.7	0.00011	0.0067	1	23	385	407
10	20.5	2.0	7.3e-06	0.00044	1	23	413	436
11	18.2	5.1	4e-05	0.0024	1	23	450	472

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C++s  r+++L rH+++H
  KWMTBOMO00051 157 FTCNFCSYSSHRRYLLLRHMKSH 179
                    89********************9 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 6.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C + Fk+  +L++H+++H
  KWMTBOMO00051 185 HKCGVCERGFKTIASLQNHLNMH 207
                    79*******************99 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 0.00018
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C+ +F+++ +L+rH r  H
  KWMTBOMO00051 213 HVCKFCNSPFTTSGELVRHVRYkH 236
                    79*******************988 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.14
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    +kC++C++     s L+rH r
  KWMTBOMO00051 242 HKCTECDYASVELSKLRRHVR 262
                    79*****************98 PP

  == domain 5  score: 17.4 bits;  conditional E-value: 6.8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp+C++  ++   LkrH+rtH
  KWMTBOMO00051 270 YQCPHCTYASPDTFKLKRHLRTH 292
                    9*********************9 PP

  == domain 6  score: 17.5 bits;  conditional E-value: 6.3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C+++F+++ +Lk+H  +H
  KWMTBOMO00051 298 YKCEHCNMCFTQSNSLKAHKLIH 320
                    9******************9998 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 0.0068
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C+ C+ ++ rk +L+ H ++ H
  KWMTBOMO00051 328 YACELCPTKCGRKTDLRIHVQKlH 351
                    88******************9999 PP

  == domain 8  score: 9.3 bits;  conditional E-value: 0.026
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC+ Cgk+F+++++ k H +tH
  KWMTBOMO00051 358 KCKRCGKTFPDRYSCKMHNKTH 379
                    8*****************9999 PP

  == domain 9  score: 16.7 bits;  conditional E-value: 0.00011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ C++  ++  +Lk+H+ +H
  KWMTBOMO00051 385 YKCELCPYASTTLRHLKSHMLKH 407
                    9*********************9 PP

  == domain 10  score: 20.5 bits;  conditional E-value: 7.3e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ C++sF++k +L+rH++  H
  KWMTBOMO00051 413 FSCDQCDQSFRQKQLLRRHQNLyH 436
                    89******************9988 PP

  == domain 11  score: 18.2 bits;  conditional E-value: 4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C++ F +k nL rH+ tH
  KWMTBOMO00051 450 HSCHECKRNFAHKGNLIRHLATH 472
                    68********************9 PP