SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16653
Pre Gene Modal
BGIBMGA004594
Annotation
PREDICTED:_zinc_finger_protein_41-like_isoform_X1_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.875
 

Sequence

CDS
ATGGATACTATTTGCCGTTTGTGTTGTTCCGATAAATTCGTCAACAATTATATATTTGACGAAAAGAATGCATGGTACCTTAAAATGGCGTTATTACCCGTTAAGATTGACAAGAACGATCGGCTGCCCCAGAAGATTTGTGATCATTGCAGTCGTAAAGTTAACGAGTTTTATGAGTTTTGTAATGAAACTATTGTAGTGGAAAATAAGCTACAAGCTTTCTTAAAACAGCAAGGAACACACAACACAACTGTAGATCTCATACTTGGAAAACCGAAGACACCAATTCTACCTCCTAAAACATGTGAACAAAGCCATCGAATTGATGAAGGTATACCAGTAGATGAAGTTGTCAAAATTAAAGTTGAAACGCCAAAAGAAATAAAACAAGAAGATATTGAAGCAGAGGAGAACTATCACTACTCAGATGACAGTGATGATGTCTATTTAACAAATCTAAAAGCAAAGAAAAACGATATTGATGTAATAAGATTAAAAAACAGAGAGAAACAGGACGTAAAAAGTAATGGTGTGAAGAAAAATTCATGCGGAAACAAGTCTGAGCTTATGGAAGATTGGTCGATTTTACTAAAGCAGTTCCCTGAGGGCCCTTATAATTTGGTCGACGAAACAGATGTACCAGTTAAACAGGAAGTCAAAGATGAAAACAGTGCAGATTTCGATGACTTGCCTAACTTAAAAGACAAATATCGTTGTTGTATTTGTCTAAAGAATTGCAAGTTTAAGAGTACATTGTTGAAGCACTATAAAACACACGGAAAGGATATTCCAAAGACGAATAATCTTCAGGTGCCTCCAATACCTGATCAGAATCCATTAAAATGCACGAGATGTAGAAAGTCTGTAAAGAAAGATACGTGGGCGGAACATTGGCAGAACCATTGGAAACGCGACCACCGGCCCTACCGATGCGCGTTGTGCGACAAATCGTTCACGTCTTCACAACAAGTCATGGTGCACGGTCTGTCGCACAGCCACAATCCAGTCGACGACGAGGCCATGCAGCTGAAGAAGCAAAATCGTTATGTTTGTGATTTTTGTCCTGAAGAATTTATGTACATGAGATGTCTGCAGGCCCACCGGACGAACGCGCACCCTGAGTCCGCCTCGAAGGCCGTGACGCACCGCTGCTGGAAGTGCTCGCGGCAGTTCGCGCACCTCAATTCCCTGCGGCGGCACTTTATGACGCACACCGGCGAGAGGAACTTCCTGTGCAACGTGTGCGGGAAGGCAATGAGCTCGAGGGACCATCTCAAGCTACACATAAATATACACACCGGCTACAAGCCAAACGTTTGTTCGACATGCGGTAAGGGTTTCGTCAAGAAGAGCAACCTGAAGCTGCACGAGCGCGTCCACAGCGGCGAGAAGCCGTACGTGTGCTCGCACTGCGGGAAGGCGTTCAGCCAGCGATCGACGCTCGTCATACACGAGAGATACCACAACGGTGTGCGGCCGTACGTGTGCGCGCTGTGCGGTCGCGGATTCGTCGCCAAGGGCTGCTGTCCGTGCACCTCAAGAACACTTGCATATAGCAGACACCCCCCGACGTGTATGGCAACACCGGAGCACTCGAAAGCACAGACTGAAATAAAAATCTAA
Protein
MDTICRLCCSDKFVNNYIFDEKNAWYLKMALLPVKIDKNDRLPQKICDHCSRKVNEFYEFCNETIVVENKLQAFLKQQGTHNTTVDLILGKPKTPILPPKTCEQSHRIDEGIPVDEVVKIKVETPKEIKQEDIEAEENYHYSDDSDDVYLTNLKAKKNDIDVIRLKNREKQDVKSNGVKKNSCGNKSELMEDWSILLKQFPEGPYNLVDETDVPVKQEVKDENSADFDDLPNLKDKYRCCICLKNCKFKSTLLKHYKTHGKDIPKTNNLQVPPIPDQNPLKCTRCRKSVKKDTWAEHWQNHWKRDHRPYRCALCDKSFTSSQQVMVHGLSHSHNPVDDEAMQLKKQNRYVCDFCPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRHFMTHTGERNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLKLHERVHSGEKPYVCSHCGKAFSQRSTLVIHERYHNGVRPYVCALCGRGFVAKGCCPCTSRTLAYSRHPPTCMATPEHSKAQTEIKI

Summary

Pfam
PF07776   zf-AD        + More
PF00096   zf-C2H2
Interpro
IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF57667   SSF57667       
PDB
5V3G     E-value=5.35232e-30,     Score=328

Ontologies

Topology

Length:
540
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0026
Exp number, first 60 AAs:
0.00187
Total prob of N-in:
0.00407
outside
1  -  540
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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