Gene

KWMTBOMO16572

Pre Gene Modal

BGIBMGA005575

Annotation

PREDICTED:_zinc_finger_protein_567-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Scaf022(-):31960-62155      View in EpiBrowser

Full name

Zinc finger protein 84      

Alternative Name

Zinc finger protein HPF2

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.571

CDS

ATGGACGATAATAGCGACGATACATCAATGGAATACGAAATAAAAAAGAGTTTGATGACCCGGAACAAATTAGCTATAATAATAAAAGGGAACAACGGTAGTTTCCAGTTTGGTTGCGTTTATTGTACGTACAAGGCCAACACTAAGAAGGCGTTGGAGAAACATTTGCTAGTGCATAACAAGCAATACAGATATCTGTGCGGGATTTGCGGAACTGGGTTAAAACGCAAAGAACATTTAGAGAGACACACGCTCGAGCACATGGAAATAAGACCTCACGTTTGTCCTGAATGCGGGAAAGGATTCAAAAGAAAAGAACATTTGAACATACATTTCGCTACACATACCGGCAACAAGAGCCAAGAGTGCTTTGTGTGTAAAAAATCGTTCTACCGGAAGGACCACCTACAGAAACACATGCAGACGCACAACAAAAACTTAGCGAACAAATTGTATATAAGCGAGCAAATGTTGAAAATCAAACAGGAGGCCATGGAAATGCTGGACGATGATAACGTTGAAATAGAAATCCGGGATAACTACGATCAGCCCACTGTTAAAATCAAGGAGGAAAACTTTAATGCGATATTCGAAAAGAATTACATCAAAATCGGAACCGGAGAGAGGCCGTTCATATGCCTCATCTGCAACAAGACGTACAAACGTAAAGATCATCTGAAGCTGCATAGCATGACGCATATGGAGAAGGACAAGGTCTGCTCGGAGTGCGGGAAAGCCTATCATAAGGAAGAACAGCTGATGGCGCATATGAGCACACACATGAATCAGCCCGCGAACGAGATAGAGGAGATGCCTCTTGTGCAGAACTTATACACCGATCAGTCGAACTTCTTTACCACGGATAACAGTCTTTTAATACCACGTTCAGAGTACAAGGCCGAACGGAAACATATCTGCTCGATCTGTCAGAGGCGCTTTAAGCGGAAGCAACATCTCAAAATACATCTAAATGTACATGTCAAGGATATAAACGACGGTGGATCACTCTGGTGCTCAATTTGTAACGAAGAACTAGCATCGGCGTCTGATTTAAACAACCACGAATGTGCCGTGGGGCAAGACGAATGTCCAAGCGAAGGGGAACAACAGCAGGCGACTCCGGAGGGAGCCAAGAAAGAGAATACTTTGCCACACGAATTCGTATGTGTCGACATGGGGCCCCAGGACAGCTCCCAGGTGGTGCTCGTCAAGGATGAACGCGACCTGCCCGTGCCCAGGCGCGTCTACGTCTGTAAATACTGTTCGAAGACATTCAGGAGGAAAGATCATTACAAAATACATTTGAACATACACACCGGAATTAAATCGTTCTTCTGTCCCGATTGTGGGAAAGGATTCTACCGCAAGGACCACCTGCAGAAACACACGCAAGTACACGCCAAAGCAAAACTAGTTGTGATGCCAAAGATCAAGAGTCTGCCGGGTCTGTATCCGATAAACTCAATACCAAAGAAGAAGGAAATAAAACCGGAAATTACCATACACGCCCCATCCAACTCGAAGTTGCGTGTGCCGCTACAGATCAAAGTGCCATATCAAATGGTGATGTCGAACGAGAACGGAGAGAGGCACGCCGTCACCATCGACCCCGCCACCGACACAGTGCTATAA

Protein

MDDNSDDTSMEYEIKKSLMTRNKLAIIIKGNNGSFQFGCVYCTYKANTKKALEKHLLVHNKQYRYLCGICGTGLKRKEHLERHTLEHMEIRPHVCPECGKGFKRKEHLNIHFATHTGNKSQECFVCKKSFYRKDHLQKHMQTHNKNLANKLYISEQMLKIKQEAMEMLDDDNVEIEIRDNYDQPTVKIKEENFNAIFEKNYIKIGTGERPFICLICNKTYKRKDHLKLHSMTHMEKDKVCSECGKAYHKEEQLMAHMSTHMNQPANEIEEMPLVQNLYTDQSNFFTTDNSLLIPRSEYKAERKHICSICQRRFKRKQHLKIHLNVHVKDINDGGSLWCSICNEELASASDLNNHECAVGQDECPSEGEQQQATPEGAKKENTLPHEFVCVDMGPQDSSQVVLVKDERDLPVPRRVYVCKYCSKTFRRKDHYKIHLNIHTGIKSFFCPDCGKGFYRKDHLQKHTQVHAKAKLVVMPKIKSLPGLYPINSIPKKKEIKPEITIHAPSNSKLRVPLQIKVPYQMVMSNENGERHAVTIDPATDTVL

Similarity

Belongs to the krueppel C2H2-type zinc-finger protein family.

Keywords

Complete proteome   DNA-binding   Isopeptide bond   Metal-binding   Nucleus   Phosphoprotein   Reference proteome   Repeat   Transcription   Transcription regulation   Ubl conjugation   Zinc   Zinc-finger  

Feature

chain  Zinc finger protein 84

Uniprot

A0A212EPG5   A0A194QB10   A0A194QTE9   A0A146UZ45   A0A3P9PF05   A0A146ZJP7   + More
A0A146ZJI9   A0A087YLI0   A0A3Q2TAN7   A0A3Q2PGR9   F6YSX4   A0A3P9PH76   A0A146TJ45   A0A147AJY1   A0A3B4DS52   A0A087UQ67   A0A3Q3IDH5   A0A2U4BYE0   A0A2U3V8L6   A0A2K6FJK4   G1SDK6   Q28E76   A0A3B1J903   W5LU54   A0A0C9RLC9   A0A087YKY1   A0A341AYU8   A0A341B0A9   A0A3Q7REB0   A0A3Q7WBG7   A0A1W7R6A9   A0A3Q2QPL3   A0A3Q7WBG0   A0A3Q7RF99   A0A2Y9Q8M6   A0A2Y9Q8M0   A0A3Q7Y1X9   A0A384DHL4   F7CG31   M3Z9Q9   A0A087UHT5   J9NXK0   E0VFL0   A0A2Y9SE15   G1RPI5   A0A2Y9SH15   A0A341B0B4   H0WES3   A0A3B4EPC2   A0A3B1K5J3   A0A3Q7Y1Y5   A0A384DHL9   L9KVK5   F1RI76   A0A084W3R5   A0A287AV18   F7E1L4   A0A3B1KJB2   A0A0C9RPJ2   K7EUU3   A0A0D9S5S4   A0A0L7R540   A0A0C9Q4T0   A0A1U7U5Q9   A0A1U7TTQ3   H0X1L7   A0A2J8IMF2   A0A2J8RAU4   F5H630   A0A340XC34   A0A2I3SZ32   P51523   A0A2J8RAV2   A0A3Q7REB5   A0A2Y9RN44   A0A2K5MJK5   H2NJ84   A0A2K5MJA9   A0A2R8ZDS5   V9IEJ4   A0A2R8Z7P5   F7AL64   G5ANV0   A0A088AQW3   A0A2K6C5W2   A0A2K5WTZ8   A0A154PIG5   A0A3Q2DMF1   A0A2K6C5V9   A0A3B5QN09   H2Q781  

Pubmed

22118469    26354079    20431018    21993624    25329095    16341006    + More
20566863    23594743    23385571    30723633    24438588    16541075    21406692    23186163    28112733    16136131    2505992    14702039    15489334    1945843    22722832    21993625    23542700   

EMBL

AGBW02013457    OWR43390.1    KQ459232    KPJ02652.1    KQ461155    KPJ08280.1    + More
GCES01075843    JAR10480.1    GCES01019793    JAR66530.1    GCES01019800    JAR66523.1    AYCK01001272    AYCK01001273    AAMC01122180    AAMC01122181    GCES01093542    JAQ92780.1    GCES01007435    JAR78888.1    KK120986    KFM79506.1    CR848413    CAJ82437.1    GBYB01009085    JAG78852.1    AYCK01001268    GEHC01000949    JAV46696.1    AAMC01124494    ADFV01132609    ADFV01132610    KK119857    KFM76924.1    AAEX03014571    DS235115    EEB12166.1    BX323072    KB320633    ELW66960.1    AEMK02000096    DQIR01029923    HCZ85398.1    ATLV01020114    KE525294    KFB44859.1    AAMC01108220    AAMC01108221    AAMC01108222    AAMC01108223    AAMC01108224    AAMC01108225    AAMC01108226    GBYB01009086    JAG78853.1    ABGA01180521    ABGA01180522    AQIB01153263    AQIB01153264    KQ414657    KOC65866.1    GBYB01009088    JAG78855.1    AAQR03096315    AAQR03096316    AAQR03096317    NBAG03000703    PNI11704.1    NDHI03003721    PNJ05624.1    AC073911    AACZ04060465    GABE01006638    JAA38101.1    PNI11703.1    PNI11705.1    PNI11709.1    M27878    X60156    AK314232    CH471218    BC036656    BC048350    BC062552    PNJ05623.1    PNJ05625.1    PNJ05629.1    AJFE02047596    AJFE02047597    JR040254    AEY59052.1    AAMC01108251    AAMC01108252    AAMC01108253    AAMC01108254    AAMC01108255    AAMC01108256    AAMC01108257    AAMC01108258    JH166237    EHA98710.1    AQIA01013576    AQIA01013577    AQIA01013578    KQ434924    KZC11602.1   

Proteomes

UP000007151    UP000053268    UP000053240    UP000242638    UP000028760    UP000265000    + More
UP000008143    UP000261440    UP000054359    UP000261600    UP000245320    UP000233160    UP000001811    UP000018467    UP000252040    UP000286640    UP000286642    UP000248483    UP000261680    UP000001073    UP000002254    UP000009046    UP000248484    UP000000437    UP000011518    UP000008227    UP000030765    UP000001595    UP000029965    UP000053825    UP000189704    UP000005225    UP000005640    UP000265300    UP000002277    UP000248480    UP000233060    UP000240080    UP000006813    UP000005203    UP000233120    UP000233100    UP000076502    UP000265020    UP000002852   

PRIDE

F1RI76    F5H630    P51523   

Pfam

PF00096   zf-C2H2        + More
PF01352   KRAB

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR017114   YY-1-like       
IPR017125   Znf_PRDM5-like       
IPR011017   TRASH_dom       
IPR003656   Znf_BED       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       

SUPFAM

SSF57667   SSF57667        + More
SSF109640   SSF109640       

CDD

cd07765  KRAB_A-box

ProteinModelPortal

A0A212EPG5   A0A194QB10   A0A194QTE9   A0A146UZ45   A0A3P9PF05   A0A146ZJP7   + More
A0A146ZJI9   A0A087YLI0   A0A3Q2TAN7   A0A3Q2PGR9   F6YSX4   A0A3P9PH76   A0A146TJ45   A0A147AJY1   A0A3B4DS52   A0A087UQ67   A0A3Q3IDH5   A0A2U4BYE0   A0A2U3V8L6   A0A2K6FJK4   G1SDK6   Q28E76   A0A3B1J903   W5LU54   A0A0C9RLC9   A0A087YKY1   A0A341AYU8   A0A341B0A9   A0A3Q7REB0   A0A3Q7WBG7   A0A1W7R6A9   A0A3Q2QPL3   A0A3Q7WBG0   A0A3Q7RF99   A0A2Y9Q8M6   A0A2Y9Q8M0   A0A3Q7Y1X9   A0A384DHL4   F7CG31   M3Z9Q9   A0A087UHT5   J9NXK0   E0VFL0   A0A2Y9SE15   G1RPI5   A0A2Y9SH15   A0A341B0B4   H0WES3   A0A3B4EPC2   A0A3B1K5J3   A0A3Q7Y1Y5   A0A384DHL9   L9KVK5   F1RI76   A0A084W3R5   A0A287AV18   F7E1L4   A0A3B1KJB2   A0A0C9RPJ2   K7EUU3   A0A0D9S5S4   A0A0L7R540   A0A0C9Q4T0   A0A1U7U5Q9   A0A1U7TTQ3   H0X1L7   A0A2J8IMF2   A0A2J8RAU4   F5H630   A0A340XC34   A0A2I3SZ32   P51523   A0A2J8RAV2   A0A3Q7REB5   A0A2Y9RN44   A0A2K5MJK5   H2NJ84   A0A2K5MJA9   A0A2R8ZDS5   V9IEJ4   A0A2R8Z7P5   F7AL64   G5ANV0   A0A088AQW3   A0A2K6C5W2   A0A2K5WTZ8   A0A154PIG5   A0A3Q2DMF1   A0A2K6C5V9   A0A3B5QN09   H2Q781  

PDB

5V3M     E-value=4.57477e-20,     Score=242

KEGG

101740760    no KO assigned | (RefSeq) zinc finger protein 484-like

GO

GO:0003676   GO:0000976   GO:0005634   GO:0003677   GO:0046872   GO:0006355   GO:0000981   GO:0008270   GO:0007186   GO:0016500   GO:0004930   GO:0006915   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

Subcellular location

Nucleus  

Length:

543

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0633499999999999

Exp number, first 60 AAs:

0.06315

Total prob of N-in:

0.00552

outside

1  -  543

 

 

Pi

18.993933

Theta

22.063295

Tajima's D

-1.141283

CLR

0.026885

CSRT

0.114944252787361

Interpretation

Uncertain