Gene

KWMTBOMO16514

Pre Gene Modal

BGIBMGA009653

Annotation

PREDICTED:_transcription_factor_CP2-like_protein_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Scaf005(+):44996-94369      View in EpiBrowser

Transcription factor

CP2

Location in the cell

Nuclear   Reliability : 4.153

CDS

ATGGAATATACGGAATATAGAGACTTTACAATGCATGACGTACGTAAAGAGGAGTACGGCTGGGAATCTACAGTTAGACTCATGGTCGGGAGGGAGGACGAATTGGGCATGTACCTGGAGGAGAGCAGGGAGGGCAGGAAGCGGAAGTGGCAGCCCGAGAAAATGAGGCGAGACGGCAGCGAAGATAAAGATCAGAAGAAGGTGCCGCCGAAGAAGATCATGGCTGCCCTAAGCGAGATAGGCGGGAGCGGCACAAGCTCCTCATCCTCGCATTTGTCTCCGGCATGGCAAGTCAACGAGCTCGATCTGGACTTACCCGTCGAACTATCCATGAACGAAGCGCTGTTGTCGCTTCCATCGCTGGCGGTGTTCAAACAGGAGGCTCCGTCTCCGACGGGCGCGGTGCTCTCGCCCCCCCGCCGCCACTGGCCCGTCCCCCGACGGAACGACGATCGGCAGATGACAAGCATGGTTGTCGACGGAGCCCGTGACGGCATGGACGAGTGCCAGCAGTCGCCTTCCCACAACGGAAACGCTATGCAGCATGGAAGTCCCGACGCCTTGCAGTGCCAACAGCAGATGCCGCCGAGCGCCGTCATGCCAATGAACGGTTACCATTCACCAAACGAACACGAGAATAAAAACGCTGGTCTGCTGATCTGCTCTCCGGTGGGCTCGCTGGAAGGCTACCTGCACTCTCCACCACACCTGCAGCAGCGTTCCGACTCCAGCTTCAAGGATGACACCAGGTTCCAGTACGTTCTGGCCGCAGCGACTTCGATAGCAACCAAACAGAACGAGGAAACCCTGACCTACCTCAACCAAGGCCAGTCCTACGAGATCAAGCTCAAGAAGCTCGGTGACTTGTCACATTACAAAGGAAAGCTGCTTAAAAGTGTCATCAAGATATGCTTCCACGAGCGCCGCTTGCAGTACATGGAAAGGGAGCAGATAGCGCAGTGGCACGCCGAGAGGCCGGGGGAGAGGATCGTAGAGGTGGACGTGCCTCTCTCGTACGGCATTATAAAAGTGGAACAATCCACAGCACTGAACGCGCTCCACGTCTACTGGGACGCTACCAAGGACGTGGGTGTTTATATAAAGGTATTCAAATTGAAAGGCGCCGATCGCAAACACAAACAGGACAGGGAGAAGGTGCTGCGCAGACCGAGGGCCGATCTGGACAAGTACCAGCCCGCCTGCGAGGCCACTGTGCTGACTACGTTGTCACATGACGCGCTGATGCCGCCGCCCTCGCTGGTCACCACCTCGCCGTCCTACTCGCCAGAGCTGTGTGTGACACCTAAATCTGCCTCGAGCCCTATCGCTACCAAGCCGATTTCTCAACCAGCCATCGTTGGTACTACTAATCAAATGAAGCCGCTGTATTGTCAAGATGCTGGTGAGATGAAGGTGAGCAGCCCAACCTGCCACTCCCCAGGAGCTATCCTGCCTGACCTACCACAGCCTGCTGAGGAACCAGACAAGAACTTTGGATTATCAAAAGATGCCACCTCCGCCGAGACTCAGGTGTGGTTGTCCCGACAACGGTTCATGCAACACGCCGCCACGTTCGCGAACTTTTCCGGGGCTGATCTGCTGAGACTATCCCGTGATGACATTATCCAGATCGTCGGACTGGCTGATGGCATACGTCTGTTCAACGCACTTCACGCCAAACGCATCTCGCCGCGCCTCACCCTGTACGTGTGCCCGCCCTCCTCCGACGTGCACTGCGCGCTCTACCTGCACGCGTGTCGCGCGCACGAGCTGCTGCACAAGCTGAACGCGCTGCAGGGAGCCGGCAGCAAGGATTGCGAAACCGTATTGGTGTCCGGTCCGAACGGCGCTCGCGTCCGCCTCACCGACGAGCTGGTGCGACATCTGCCAGACAACTCCACCTATCGCCTCAAGAGACTCGAAGACTGCAACGCTCTGCTCCTAAGCGCCACCACCGGCAACTGA

Protein

MEYTEYRDFTMHDVRKEEYGWESTVRLMVGREDELGMYLEESREGRKRKWQPEKMRRDGSEDKDQKKVPPKKIMAALSEIGGSGTSSSSSHLSPAWQVNELDLDLPVELSMNEALLSLPSLAVFKQEAPSPTGAVLSPPRRHWPVPRRNDDRQMTSMVVDGARDGMDECQQSPSHNGNAMQHGSPDALQCQQQMPPSAVMPMNGYHSPNEHENKNAGLLICSPVGSLEGYLHSPPHLQQRSDSSFKDDTRFQYVLAAATSIATKQNEETLTYLNQGQSYEIKLKKLGDLSHYKGKLLKSVIKICFHERRLQYMEREQIAQWHAERPGERIVEVDVPLSYGIIKVEQSTALNALHVYWDATKDVGVYIKVFKLKGADRKHKQDREKVLRRPRADLDKYQPACEATVLTTLSHDALMPPPSLVTTSPSYSPELCVTPKSASSPIATKPISQPAIVGTTNQMKPLYCQDAGEMKVSSPTCHSPGAILPDLPQPAEEPDKNFGLSKDATSAETQVWLSRQRFMQHAATFANFSGADLLRLSRDDIIQIVGLADGIRLFNALHAKRISPRLTLYVCPPSSDVHCALYLHACRAHELLHKLNALQGAGSKDCETVLVSGPNGARVRLTDELVRHLPDNSTYRLKRLEDCNALLLSATTGN

Uniprot

A0A139WF83   A0A1Y1LDP9   A0A2J7Q2S2   A0A1Y1LA11   A0A2J7Q2R8   A0A2J7Q2S9   + More
V5G4Q8   A0A1L8DIC0   A0A1L8DI50   A0A1L8DIH0   A0A1L8DI60   V9I9A9   A0A1B6DG69   A0A1B6GEK0   V9I758   V9I8E3   A0A0J7L5F1   A0A232FAA7   A0A1B0CIF9   A0A158N974   A0A0P5A5H3   A0A0P5UBK3   A0A0P5TE66   A0A0P5U7Q5   A0A0P5A7Y5   A0A0P4YWA4   A0A0P5Q9F6   A0A0P4Y750   A0A0P4YGR5   A0A0P5CPX5   A0A0P4YDM2   A0A0P4Z5N9   A0A0P5UUP0   A0A0P5QLS9   A0A0P5QBR1   A0A0N8C9T4   A0A0P6ESM4   A0A0P5YUI8   A0A0P5L2F6   A0A0N8C2T6   A0A0P4YVJ3   A0A0N7ZV02   A0A0P5Y071   A0A0P6FZ32   A0A0P5SPN8   A0A0P5C4Y4   A0A0N8A0X1   A0A0P4ZLR3   A0A0P5VMZ2   A0A0P6GJK9   A0A0P5UBK1   A0A0P6JK82   A0A0P4ZDR9   A0A0N8DKE3   A0A0P5XWL5   A0A0P5BDU5   A0A0P5RZF1   A0A0V0G599   A0A0P5B1J2   A0A224X9T8   A0A1J1IB54   A0A0A9Z1B5   A0A0A9Z2U4   A0A2R5LGD9  

Pubmed

18362917    19820115    28004739    28648823    21347285    25401762    + More

EMBL

KQ971354    KYB26457.1    GEZM01062471    GEZM01062470    JAV69706.1    NEVH01019077    + More
PNF22878.1    GEZM01062469    JAV69708.1    PNF22880.1    PNF22879.1    GALX01003456    JAB65010.1    GFDF01007959    JAV06125.1    GFDF01007958    JAV06126.1    GFDF01007960    JAV06124.1    GFDF01007961    JAV06123.1    JR036111    AEY56924.1    GEDC01014135    GEDC01012621    GEDC01010142    JAS23163.1    JAS24677.1    JAS27156.1    GECZ01013467    GECZ01008897    GECZ01006525    GECZ01005691    JAS56302.1    JAS60872.1    JAS63244.1    JAS64078.1    JR036104    AEY56920.1    JR036108    AEY56922.1    LBMM01000662    KMQ97851.1    NNAY01000542    OXU27781.1    AJWK01013295    AJWK01013296    AJWK01013297    AJWK01013298    AJWK01013299    AJWK01013300    AJWK01013301    AJWK01013302    AJWK01013303    AJWK01013304    ADTU01008785    ADTU01008786    ADTU01008787    ADTU01008788    ADTU01008789    GDIP01203775    JAJ19627.1    GDIP01115378    JAL88336.1    GDIP01128721    JAL74993.1    GDIP01116868    JAL86846.1    GDIP01215164    JAJ08238.1    GDIP01222714    JAJ00688.1    GDIQ01120372    JAL31354.1    GDIP01231716    JAI91685.1    GDIP01230410    JAI92991.1    GDIP01183118    JAJ40284.1    GDIP01231717    JAI91684.1    GDIP01217563    JAJ05839.1    GDIP01111333    GDIP01052153    LRGB01000918    JAL92381.1    KZS15144.1    GDIQ01118567    JAL33159.1    GDIQ01122974    JAL28752.1    GDIQ01100787    JAL50939.1    GDIQ01058494    JAN36243.1    GDIP01053298    JAM50417.1    GDIQ01177245    GDIQ01055845    GDIQ01055844    JAK74480.1    GDIQ01120371    JAL31355.1    GDIP01221630    JAJ01772.1    GDIP01209921    JAJ13481.1    GDIP01064744    JAM38971.1    GDIQ01051999    JAN42738.1    GDIP01137132    JAL66582.1    GDIP01191219    JAJ32183.1    GDIP01193369    JAJ30033.1    GDIP01215163    JAJ08239.1    GDIP01097842    JAM05873.1    GDIQ01051998    JAN42739.1    GDIP01115379    JAL88335.1    GDIQ01016597    JAN78140.1    GDIP01215162    JAJ08240.1    GDIP01025103    JAM78612.1    GDIP01078930    JAM24785.1    GDIP01191218    JAJ32184.1    GDIQ01112016    JAL39710.1    GECL01002910    JAP03214.1    GDIP01191220    JAJ32182.1    GFTR01007341    JAW09085.1    CVRI01000042    CRK95673.1    GBHO01035091    GBHO01005953    GBHO01005947    GBRD01007938    GBRD01007937    JAG08513.1    JAG37651.1    JAG37657.1    JAG57883.1    GBHO01005951    GBHO01005949    GBHO01005948    GBRD01007941    GBRD01007940    JAG37653.1    JAG37655.1    JAG37656.1    JAG57880.1    GGLE01004261    MBY08387.1   

Proteomes

UP000007266    UP000235965    UP000036403    UP000215335    UP000092461    UP000005205    + More
UP000076858    UP000183832   

Pfam

PF04516   CP2        + More
PF18016   SAM_3
PF00642   zf-CCCH
PF00383   dCMP_cyt_deam_1

Interpro

IPR041418   SAM_3        + More
IPR040167   TF_CP2-like       
IPR007604   CP2       
IPR013761   SAM/pointed_sf       
IPR016193   Cytidine_deaminase-like       
IPR001841   Znf_RING       
IPR036855   Znf_CCCH_sf       
IPR002125   CMP_dCMP_dom       
IPR000571   Znf_CCCH       
IPR013083   Znf_RING/FYVE/PHD       

SUPFAM

SSF47769   SSF47769        + More
SSF53927   SSF53927       
SSF90229   SSF90229       

Gene 3D

1.10.150.50     3.30.40.10    

ProteinModelPortal

A0A139WF83   A0A1Y1LDP9   A0A2J7Q2S2   A0A1Y1LA11   A0A2J7Q2R8   A0A2J7Q2S9   + More
V5G4Q8   A0A1L8DIC0   A0A1L8DI50   A0A1L8DIH0   A0A1L8DI60   V9I9A9   A0A1B6DG69   A0A1B6GEK0   V9I758   V9I8E3   A0A0J7L5F1   A0A232FAA7   A0A1B0CIF9   A0A158N974   A0A0P5A5H3   A0A0P5UBK3   A0A0P5TE66   A0A0P5U7Q5   A0A0P5A7Y5   A0A0P4YWA4   A0A0P5Q9F6   A0A0P4Y750   A0A0P4YGR5   A0A0P5CPX5   A0A0P4YDM2   A0A0P4Z5N9   A0A0P5UUP0   A0A0P5QLS9   A0A0P5QBR1   A0A0N8C9T4   A0A0P6ESM4   A0A0P5YUI8   A0A0P5L2F6   A0A0N8C2T6   A0A0P4YVJ3   A0A0N7ZV02   A0A0P5Y071   A0A0P6FZ32   A0A0P5SPN8   A0A0P5C4Y4   A0A0N8A0X1   A0A0P4ZLR3   A0A0P5VMZ2   A0A0P6GJK9   A0A0P5UBK1   A0A0P6JK82   A0A0P4ZDR9   A0A0N8DKE3   A0A0P5XWL5   A0A0P5BDU5   A0A0P5RZF1   A0A0V0G599   A0A0P5B1J2   A0A224X9T8   A0A1J1IB54   A0A0A9Z1B5   A0A0A9Z2U4   A0A2R5LGD9  

PDB

5MR7     E-value=3.92738e-09,     Score=149

KEGG

101735982    K09275 transcription factor CP2 and related proteins | (RefSeq) transcription factor CP2-like protei

GO

GO:0006357   GO:0003700   GO:0005634   GO:0043565   GO:0003824   GO:0046872  

PANTHER

PTHR11037  

Length:

654

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00471

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00086

outside

1  -  654

 

 

Pi

2.531975

Theta

21.371832

Tajima's D

-1.752018

CLR

0.001902

CSRT

0.0313484325783711

Interpretation

Uncertain