Silkworm Genome Informatics Database

Gene

KWMTBOMO16507

Pre Gene Modal

BGIBMGA004545

Annotation

PREDICTED:_transcriptional_activator_cubitus_interruptus_[Bombyx_mori]

Location

Bomo_Scaf004(-):77951-88525 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.122

CDS

ATGACGGCGGCTGTTCTTTGCCCCGTCGTCTGGGTGGACTGCAAGCTTGAATTTCCCACTCAAGATGATTTGGTGAAGCATATCAATACGGACCACATACACGCCAGCAAGAAGGCGTTCGTCTGCCGCTGGGTCGGCTGTTCCCGAGACGAAAAGCCTTTCAAAGCCCAATACATGCTTGTCGTTCACATGAGGAGGCACACTGGAGAGAAACCTCATAAGTGCACTTTCGAAGGCTGCTGCAAAGCGTACTCCAGGCTGGAAAACCTGAAGACCCACCTCCGGTCGCACACTGGAGAGAAACCGTACACCTGCGAGTATCCGGGGTGCGCTAAAGCTTTTTCCAACGCGAGCGACAGAGCTAAACATCAAAACAGAACGCACAGTAATGAGAAACCGTACGTCTGTAAAGCGCCGGGCTGCACCAAGAGGTACACCGACCCCTCCTCGCTCCGGAAACACGTGAAAACCGTTCACGGAGCCGAGTTCTACGCGAGTAAGAAACATAAGGGTTGCACGAGAGGTGACGACTCCGCGGAGTCTGGCGGCGGTGGCGCAGGGTCGTCTCCTCGTTCGGAGGAAGGCGGAGTACCACCCGCGATCCGGGGTCACACATCATCGGCGTCCGTCAAGAGCGAGAGTCCCGCGTCGCCCATACCGCACGGCTTGCACACTTCCGCCCACCAGTTGTCTGCGCAATGCGGTGGGGAGCTGGACTTCGGCGGCGGCCTGGGAGGATACCGGGATGAAAACGGCCTGCCGTACTTCAGATTAGACGGAGAGATCGAGCAGGAAGTGGTCGGTGAAGTGGGACAGTTGCCGCTGATGCTGCGAGCTATGGTCGCTATCGGCGAGCCCCGCGCCGCCCCGCACGCCCCCCGCCTCGGGAACAAGATGGCGCTCGCGAGGATGCCACCGCCACACGCCGACCTCGGAGGAGGCGGGGTCACGGGGAGGACAGAGCTGGGCAGCACCAACGTTGGGGTGGAACTGAAGACCGGGGCCTCTAACACGAGGCGCGATTCTGGAATCTCAAGCGGCAGTAGCCTCTACAGCGCCAGGTCTTCGGATATATCTCGTAAAAGCAGTCAAGCATCAGTTGTATCGGGAGCAGTGGCGGGAGGAGTCGGGGCGCAACGTCTAGTCGCGCACCACACCGCGGCGTACGACCAGCTCTCTCCCGACAGCAGTCGAAGATCTAGTCAAGTTTCGTGTGCGGGATACGCACCTCCGCCCTCATCAGCCCTGGCCGCTGTGCAGGCCGTCAGGACATCGCAAGGGAATCAGGCCATCCTACTCCGGGGAGTCACATGTTCTGAAGTCAGGGCAGAGGAACTAGCATTGGAGTTGGATCCGAACGTTCAAGTGAAAGAAGAGGCGAGAAGACTTTCGGAGCAGTCGAACTTAAGTGATCAGACCCAAGGCTACCAGCCGTACCCTTGCGGAACCGACGGTTTGGGCGACGCTCCGTTCCCGTTCAAAACTGAATGCGACCAGGAAACTGTGACGTATAAGGAGTCACGGTCCAATTCCACCAGCACCGTGGTGGTCACCACGGCACAGATCCACCACCCCAACCAGGAAGTCAACTTGGAACAGGTGGCTGAAGGTGAAATGGTGGAGAATAAGCTGGTGATACCCGACGAAATGATGCAATATCTTAACCAATCAATATTGGCAACCGAAGCGGAAACATCAGCTAAAACGGACTCCGCAAATCGACCTAACACAGAACCGAGTCTAGATAAGGACAGTGCTACCAAAGACAATACCACAAACGAACAACAAAACACTAATAATTCCAGTGATAAAGTCAGTGACGTAGCGACCAGTGACGATTCTCTACTTAAAAATCTAGGTGCCATAGGAAGTGATCTCAATATAAGTGATATTCAAGTCGATTTAAGGTCGTTAGACGTTAGTATGTCGGGCAACAGCGGCTCTCTTCTGGCTGTCAAAACACCCGAAGATAAAACTCCTCTACAAGAACAAGTCACCCCGGAAGTCAAAGCAGAGAACAAAGAAAGGGAAACGAAGAAGTCGGATCCGAATCCTTTGCAATCACTGCAAACGATGACAGCCAACCAGACTGAACAATCCAATAAAATTAGGGCTAATGCTCAGAAACAGAATAAGACGAATACTAAGACTATAATGAGTCAAAATATTTTGAGTCCGCAGAACCTGCCTCACAGCATGTTGAGTCCACAAAGCCTCCCGCACAGTGCAATGAGTCCACAAAGCGTTATGAGTCCGCACAATATCCCACAAAATATTATGTCCCCTCCCAGTGCTTATAACGTGATGAGCCCCCAAAGTGCGATGAGTGTAATGTCCCCGCAGCATAATGCCATGAGCCCACAAAGCATGCAAAGTCTCATGAGTCCACAGATACCCAACCAAATAATGTTGAGCCCTCGTCACAATAACGTCAGTAGCCCCATGTCACAGAATATGGCTAGTCCCATGATGAACATGGCTAGTCCGATGGGACAGACCATAGCCAGTCCCATGAGCCACGGTATGCCCAGCCCCATGCATCCAGGAATGCAAAGCCCAATGGGACAGGGCATGGCAAGTCCAATGATACAAAACATGCCGGTGGCTATGAACGGACCTGTGAACCCCAATCTCCAAAATCAAATGATCAACGTTAATCAACAACAAATGGCTCTCAACTATCGGCCCAACTGTCACAGAATGCCGGCTCGGCCAAATATGCCGATGCCGAACCAGTACACGCAAAATTACAATAACAACCAACCACCACAATATCCAATGCAAAACCAAAATGTTAACGTGCACCATCAAAACGTGCAAAATTATCAAATCATGCAATCTTACAACCAGAACCAAGCACCGACGGTCAATCAAATGGTTCAAAATCAGAACGTTCATTATCCGAACCAGCCTATGATGAACTACCAACAGATGAACTTCAACCAGAACAGCCGTGCTCACCCGATGCAGTCGTCTAGATCGTCCATGATGAGCGTCGACAACAGCGGCAATATGACCCGGGGTGTAATGACCAGTTACTGCGACACGCAACACCAGTGCCCGCCCGCACAGACCAACCATTACAACCAGAACGTACAGTACCCTCAGCCGCCTCCATACAATGCCGTCGTCAATAACAACGTGATGGGACCTCCACCACCGAAGAACAATCACCAATACAACCAAGCTATGATGAACAATAACCAATATTACAATCACCAGAGGCCTTACAACCAATGGGACTATCCAGGCAATCAGTTCAACAAACACAATCCACAGAAGTCCACACCGAATTCCGTGAACATGTCGACGGGAAGCCAGAAACAAGTCAAGTGCAACCGGCTGACGAACTGCAACCAAATCAAGAACGACCAGGCTGATTGCAGCATGAACAGCCTGAGGAGCCAAAACAATCAGCCCAGCGAAGTCCAAGTCTGGGACATATCTCAGTCGCAAATCGAAGCGAACAACGGAAGACGGAAGACCCAAAACAATTCAATGAGACAGGAAACTTATCAGAGAACGCTGGAGTACGTCGAGAACTGTGAAAACTGGAAGAGTTCTGAAATGGTGTCGAGCACCACGCATCCCCTGCAAGGCGATAATATGGTTGTGAATGACCTCCAGACGTCTTTGTCTTCGTTTTACGAGGAGAATCAATACCTCCAAATGATTCAATAG

Protein

MTAAVLCPVVWVDCKLEFPTQDDLVKHINTDHIHASKKAFVCRWVGCSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCCKAYSRLENLKTHLRSHTGEKPYTCEYPGCAKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYASKKHKGCTRGDDSAESGGGGAGSSPRSEEGGVPPAIRGHTSSASVKSESPASPIPHGLHTSAHQLSAQCGGELDFGGGLGGYRDENGLPYFRLDGEIEQEVVGEVGQLPLMLRAMVAIGEPRAAPHAPRLGNKMALARMPPPHADLGGGGVTGRTELGSTNVGVELKTGASNTRRDSGISSGSSLYSARSSDISRKSSQASVVSGAVAGGVGAQRLVAHHTAAYDQLSPDSSRRSSQVSCAGYAPPPSSALAAVQAVRTSQGNQAILLRGVTCSEVRAEELALELDPNVQVKEEARRLSEQSNLSDQTQGYQPYPCGTDGLGDAPFPFKTECDQETVTYKESRSNSTSTVVVTTAQIHHPNQEVNLEQVAEGEMVENKLVIPDEMMQYLNQSILATEAETSAKTDSANRPNTEPSLDKDSATKDNTTNEQQNTNNSSDKVSDVATSDDSLLKNLGAIGSDLNISDIQVDLRSLDVSMSGNSGSLLAVKTPEDKTPLQEQVTPEVKAENKERETKKSDPNPLQSLQTMTANQTEQSNKIRANAQKQNKTNTKTIMSQNILSPQNLPHSMLSPQSLPHSAMSPQSVMSPHNIPQNIMSPPSAYNVMSPQSAMSVMSPQHNAMSPQSMQSLMSPQIPNQIMLSPRHNNVSSPMSQNMASPMMNMASPMGQTIASPMSHGMPSPMHPGMQSPMGQGMASPMIQNMPVAMNGPVNPNLQNQMINVNQQQMALNYRPNCHRMPARPNMPMPNQYTQNYNNNQPPQYPMQNQNVNVHHQNVQNYQIMQSYNQNQAPTVNQMVQNQNVHYPNQPMMNYQQMNFNQNSRAHPMQSSRSSMMSVDNSGNMTRGVMTSYCDTQHQCPPAQTNHYNQNVQYPQPPPYNAVVNNNVMGPPPPKNNHQYNQAMMNNNQYYNHQRPYNQWDYPGNQFNKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNNQPSEVQVWDISQSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGDNMVVNDLQTSLSSFYEENQYLQMIQ

Uniprot

H9J4V5 A0A2H1WMM1 A0A2A4JSD4 A0A2A4JTK9

Pubmed

19121390

EMBL

BABH01025788 BABH01025789 BABH01025790 ODYU01009704 SOQ54320.1 NWSH01000695 + More
PCG74739.1 PCG74740.1

Proteomes

UP000005204 UP000218220

PRIDE

H9J4V5

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J4V5 A0A2H1WMM1 A0A2A4JSD4 A0A2A4JTK9

PDB

2GLI E-value=1.16756e-68, Score=665

KEGG

692674 K16799 transcriptional activator cubitus interruptus | (RefSeq) Ci; transcriptional activator cubitu

GO

GO:0003676 GO:0046872 GO:0004725 GO:0006470 GO:0008138 GO:0016491 GO:0016651 GO:0046835 GO:0006281 GO:0006259

Length:

1226

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00019

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1 - 1226

Pi

26.626765

Theta

26.981158

Tajima's D

-0.766001

CLR

0

CSRT

0.182840857957102

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree