Gene

KWMTBOMO16496

Annotation

S08404_hypothetical_protein_1_-_silkworm_transposon_mag

Location

Bomo_Scaf003(-):80137-81025      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.696

CDS

ATGGGTGAGGAAGCGTACGATTTATTATCGACATTAGCCAGCCCTTCGAAGCCGTCACAATTAACATATGCTAATGCTGTAGCGATGTTGGCAGCTCACCTGCAACCGAAGCCCTCAATCTTGGCGGAAAGATACAAGTTTCGACAACGTCGGCAGCTGAATGAGTCAATAGCTGACTACCTCACAGAATTAAAAAAAATATCAAAAAATTGTGAATTCGGCTCGTCGCTGGATGAAAATCTGCGTGATCAAATGGTTTGTGGATTAAAGAGCGAAATCATACGGCAAAGGTTATTTGCCGAGGAGAAATTAGAATATAAGCGTGCAGTTACGTTAGCTTTGTCATTAGAAGCTGCGGAGAGGGATGCGATTGCAGTGGAACGTACGCCAATTGAGGAGGTTAACAAAATTAACTTCAATGAATGTTCAAGATGTGGAGACAGGAGACACCAAGCAAAGGATTGCATATACAAAGACTACGTGTGCAGTTCATGTCATGAAACCGGCCATCTACGAAGAATGTGCCCCAAAAACGGGCTTAAGAACCAGGCGGAGGCAGCCGGGGGTTCAGCACGCACCGGGCGCCGGGGAACCGGGGTGCAGGCGGCAACAGGCGATCGTGGCGCGGGCAGCGCGGTGCGGGACGAGGAGGCCGAGAGCGGGCTCCTTTGCACTTATTATACGATCAAAACAACGATGACACATACAACAACTTCAATAATGAACAGGACGGGTGTGGAGAAGAAAATGAGCCTATGTACCAAATGA

Protein

MGEEAYDLLSTLASPSKPSQLTYANAVAMLAAHLQPKPSILAERYKFRQRRQLNESIADYLTELKKISKNCEFGSSLDENLRDQMVCGLKSEIIRQRLFAEEKLEYKRAVTLALSLEAAERDAIAVERTPIEEVNKINFNECSRCGDRRHQAKDCIYKDYVCSSCHETGHLRRMCPKNGLKNQAEAAGGSARTGRRGTGVQAATGDRGAGSAVRDEEAESGLLCTYYTIKTTMTHTTTSIMNRTGVEKKMSLCTK

Similarity

Belongs to the complex I LYR family.

Uniprot

A0A3S2PB62   A0A0L7L8L8   A0A2B4RTJ4   A0A3B3SNE8   A0A2B4SPW6   A0A2S2PAH0   + More
A0A3P8NG55   A0A1Y1LPV1   A0A1A8C840   A0A3S3NQ29   A0A1B6CPB9   A0A1B6DD07   K7EWQ6   A0A1Y1MRA2   A0A1E1XFV8   A0A3B3T0U0   A0A3Q1EQC9   A0A1A8FCH6   A0A3P8NEQ7   A0A2B4SG71   A0A2B4RPN6   A0A147BCB7   A0A2A4K2Y4   L7MMK9   A0A131XQT5   A0A1B6CK52   A0A1B6E6W0   A0A0S7IPT0   A0A1A8V6A3   W4LLX0   A0A1B6MJ81   A0A3P8VLQ9   A0A0L7L4A5   A0A1B6MUT2   A0A0L7KTF6   X1XU28   A0A3B3H2N7   A0A3P8VSE7   A0A2B4SFB0   L7MC08   A0A3B3H285   A0A2B4RXD0   J9LCT9   A0A2H1V4Y6   A0A3P8Q506   A0A085N6E6   A0A2S2PU23   A0A1B6L0V9   A0A1B6KDA3   A0A2G8KZ95   A0A0L7K286   A0A293MR82   A0A1Z5KXP3   A0A182X639   A0A085LNM9   A0A2B4T0D2   A0A2I4C6V0   A0A3N0YT70   A0A2R5LIR9   A0A0L7K3M9   A0A3B4VPK4   A0A0L7L085   A0A1B8XTH5   A0A3R7GU59   A0A0L7LC80   A0A3B3XP10   A0A1Y1M058   A0A3S0ZV35   A0A1W7R676   A0A1W7R6B8   A0A3B3Q7L2   A2TGR4   A0A085MRV2   W4LLJ5   A0A131YR50   A0A2B4R781   A0A085N4P6  

Pubmed

26227816    29240929    28004739    17381049    28503490    29652888    + More
25576852    24476823    24487278    17554307    24929829    29023486    28528879    20431018    17694394    26830274   

EMBL

RSAL01000130    RVE46453.1    JTDY01002326    KOB71659.1    LSMT01000298    PFX20931.1    + More
LSMT01000050    PFX30415.1    GGMR01013781    MBY26400.1    GEZM01051399    JAV74971.1    HADZ01011823    HAEA01016148    SBP75764.1    NCKU01014527    RWR99571.1    GEDC01021971    JAS15327.1    GEDC01013717    JAS23581.1    AGCU01195578    GEZM01030100    JAV85807.1    GFAC01001043    JAT98145.1    HAEB01010230    SBQ56757.1    LSMT01000091    PFX28043.1    LSMT01000354    PFX19571.1    GEGO01007419    JAR87985.1    NWSH01000218    PCG78288.1    GACK01000385    JAA64649.1    GEFM01006397    JAP69399.1    GEDC01023506    GEDC01023205    JAS13792.1    JAS14093.1    GEDC01007675    GEDC01003661    JAS29623.1    JAS33637.1    GBYX01426815    JAO54450.1    HAEJ01014645    SBS55102.1    AZHX01001899    ETW98899.1    GEBQ01003960    JAT36017.1    JTDY01003118    KOB70119.1    GEBQ01006635    GEBQ01000281    JAT33342.1    JAT39696.1    JTDY01006045    KOB66341.1    ABLF02019752    LSMT01000102    PFX27500.1    GACK01003652    JAA61382.1    LSMT01000299    PFX20902.1    ABLF02015736    ABLF02039528    ABLF02042142    ODYU01000701    SOQ35910.1    KL367545    KFD65042.1    GGMR01020219    MBY32838.1    GEBQ01022644    GEBQ01012433    JAT17333.1    JAT27544.1    GEBQ01030602    JAT09375.1    MRZV01000292    PIK53317.1    JTDY01015222    KOB51965.1    GFWV01017841    MAA42569.1    GFJQ02007084    JAV99885.1    KL363363    KFD46575.1    LSMT01000001    PFX35006.1    RJVU01027767    ROL48908.1    GGLE01005288    MBY09414.1    JTDY01012655    KOB52243.1    JTDY01004038    KOB68679.1    KV463122    OCA13964.1    NIRI01002335    RJW62347.1    JTDY01001749    KOB72999.1    GEZM01043158    JAV79264.1    RQTK01000238    RUS83602.1    GEHC01000976    JAV46669.1    GEHC01000975    JAV46670.1    EF199621    ABM90392.1    KL367711    KFD59948.1    AZHX01001887    ETW98968.1    GEDV01006828    JAP81729.1    LSMT01001234    PFX12679.1    KL367556    KFD64442.1   

Proteomes

UP000283053    UP000037510    UP000225706    UP000261540    UP000265100    UP000285301    + More
UP000007267    UP000257200    UP000218220    UP000019140    UP000265120    UP000007819    UP000001038    UP000230750    UP000076407    UP000192220    UP000261420    UP000008143    UP000261480    UP000271974   

PRIDE

L7MC08   

Pfam

PF00078   RVT_1        + More
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00665   rve
PF05347   Complex1_LYR
PF00098   zf-CCHC
PF03732   Retrotrans_gag
PF17917   RT_RNaseH
PF00929   RNase_T
PF12796   Ank_2
PF03564   DUF1759
PF00077   RVP

Interpro

IPR001584   Integrase_cat-core        + More
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001878   Znf_CCHC       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR036875   Znf_CCHC_sf       
IPR008011   Complex1_LYR       
IPR005162   Retrotrans_gag_dom       
IPR001995   Peptidase_A2_cat       
IPR041373   RT_RNaseH       
IPR002110   Ankyrin_rpt       
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR001969   Aspartic_peptidase_AS       
IPR005312   DUF1759       
IPR018061   Retropepsins       
IPR034128   K02A2.6-like       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF48403   SSF48403       

Gene 3D

2.40.70.10     3.30.420.10     1.25.40.20    

CDD

cd00204  ANK
cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A3S2PB62   A0A0L7L8L8   A0A2B4RTJ4   A0A3B3SNE8   A0A2B4SPW6   A0A2S2PAH0   + More
A0A3P8NG55   A0A1Y1LPV1   A0A1A8C840   A0A3S3NQ29   A0A1B6CPB9   A0A1B6DD07   K7EWQ6   A0A1Y1MRA2   A0A1E1XFV8   A0A3B3T0U0   A0A3Q1EQC9   A0A1A8FCH6   A0A3P8NEQ7   A0A2B4SG71   A0A2B4RPN6   A0A147BCB7   A0A2A4K2Y4   L7MMK9   A0A131XQT5   A0A1B6CK52   A0A1B6E6W0   A0A0S7IPT0   A0A1A8V6A3   W4LLX0   A0A1B6MJ81   A0A3P8VLQ9   A0A0L7L4A5   A0A1B6MUT2   A0A0L7KTF6   X1XU28   A0A3B3H2N7   A0A3P8VSE7   A0A2B4SFB0   L7MC08   A0A3B3H285   A0A2B4RXD0   J9LCT9   A0A2H1V4Y6   A0A3P8Q506   A0A085N6E6   A0A2S2PU23   A0A1B6L0V9   A0A1B6KDA3   A0A2G8KZ95   A0A0L7K286   A0A293MR82   A0A1Z5KXP3   A0A182X639   A0A085LNM9   A0A2B4T0D2   A0A2I4C6V0   A0A3N0YT70   A0A2R5LIR9   A0A0L7K3M9   A0A3B4VPK4   A0A0L7L085   A0A1B8XTH5   A0A3R7GU59   A0A0L7LC80   A0A3B3XP10   A0A1Y1M058   A0A3S0ZV35   A0A1W7R676   A0A1W7R6B8   A0A3B3Q7L2   A2TGR4   A0A085MRV2   W4LLJ5   A0A131YR50   A0A2B4R781   A0A085N4P6  

KEGG

NA   

GO

GO:0008270   GO:0003676   GO:0015074   GO:0004190   GO:0016021   GO:0006355   GO:0016491   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

Length:

255

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14068

Exp number, first 60 AAs:

0.13925

Total prob of N-in:

0.01657

outside

1  -  255

 

 

Pi

4.625542

Theta

5.122729

Tajima's D

0.234399

CLR

0.585278

CSRT

0.464076796160192

Interpretation

Uncertain