Gene

KWMTBOMO16476  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002207

Annotation

PREDICTED:_zinc_finger_protein_235-like_[Bombyx_mori]

Location

Bomo_Scaf001(+):175726-181613      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.78

CDS

ATGGAGAAATCTGAAAAGCTTTGCCGAGCGTGCCTTGGTGTAGAAAACCTAAAGAAAATTGAAAACTCGCAACTTGAAGAAACGTTCAGATTATTAAGTGGTGACCAAGTGTTCTCATCTAGGAAACCATATATCTTCTGCCATCTATGTCATGCACAGTTGTTAATATGTCATCGATTCAGAGAAAGATGCCAACACTCAAATGAGGTTCTGGAACAAACATTGAACAATGAAGTGCTTGATAGTGATGATATCTCAACACCTTCACATGTTAAAGCCACAGCAGAAAAAGTTGAATATAATGAAAGCAAAAATCCTATTTTAACTGAAGTCTACATTGAATATGAAAATAAAGAAAGAGATGATACAAACATTAAAGATGAAAACATTAAAGAACTAGTCAATGTTAATATAAAAAATGAATTAAATGACCATGATTGCAAAAATGTTTGTGAATCTAATGAGGGACTAGATGATTTGGATACAGAAATACACAAGAAAAATACCTTAACGAAAGAATTGGTGGAAAATGAAGAAAAAACATTGGTAACCGAATTAAATAATGAAATAAAAAAACGGACACGTAAAAAAAAATTTAAGCAGATAGGTAAATATTTTGAAACAAAACAGAACATGGCCAATTTTGAACATACATATGATTTGAATATAATAACTTTGAGTACCGAAGATCAATACAAAGAGATTTTGAAACGTAAAAATGGCTTTTCATATCCATTCAGATGCAGCCTATGCTACAAAAGTTATATGGACGATGATAACTTGAATAAACATTTTAAAAAGTTGCATGATCCTAGTCGAGGCGATGAGGTGTGTGATATATGTAAGACACGTTACAGAGACAAGAAAATGTTGAAAAGACACATGAAGACGCATCGCTTGAAGTTTGCCTGTAGACAGTGTAAACATGTCTCTATACTTAGCTCCCAAGCAGTAGAACATTACAACATGCACAGAGGCCAGGTGTACAAGTGTCAAAACTGTGATAAGACTTACGACAAACAAACCACATACTTAGCGCACATAAGGTACAGTCACCCGTCGAAGTGCATCTGGTGCGAGCTGTGTGGCGAGTCCTACGTCTCCGAGACCGGCCTCAAGTGTCACCAGAACTTGGTCCATAAGGAGATACTTTGGCTGTAA

Protein

MEKSEKLCRACLGVENLKKIENSQLEETFRLLSGDQVFSSRKPYIFCHLCHAQLLICHRFRERCQHSNEVLEQTLNNEVLDSDDISTPSHVKATAEKVEYNESKNPILTEVYIEYENKERDDTNIKDENIKELVNVNIKNELNDHDCKNVCESNEGLDDLDTEIHKKNTLTKELVENEEKTLVTELNNEIKKRTRKKKFKQIGKYFETKQNMANFEHTYDLNIITLSTEDQYKEILKRKNGFSYPFRCSLCYKSYMDDDNLNKHFKKLHDPSRGDEVCDICKTRYRDKKMLKRHMKTHRLKFACRQCKHVSILSSQAVEHYNMHRGQVYKCQNCDKTYDKQTTYLAHIRYSHPSKCIWCELCGESYVSETGLKCHQNLVHKEILWL

Uniprot

A0A194QHT0   A0A2H1W417   A0A2W1BBI5   A0A2W1BNQ1   A0A2A4JVY9   A0A1E1W0D9   + More
A0A2W1BE97   A0A2H1VK03   A0A1E1W0D1   A0A212ET42   A0A2A4K8P9   H9IWW1   A0A2H1V264   A0A212F6M7   A0A2A4K5S6   A0A0N1IQ78   A0A2H1WDF0   H9IWV3   A0A1E1VZG4   A0A2A4K955   A0A194QRI4   A0A212ESE3   A0A2W1BQ38   A0A2H1V556   A0A2P8YR05   H9JCE3  

Pubmed

26354079    28756777    22118469    19121390    29403074   

EMBL

KQ458981    KPJ04495.1    ODYU01006169    SOQ47788.1    KZ150166    PZC72652.1    + More
KZ150005    PZC75235.1    NWSH01000508    PCG75979.1    GDQN01010599    JAT80455.1    KZ150164    PZC72671.1    ODYU01002960    SOQ41121.1    GDQN01010670    JAT80384.1    AGBW02012649    OWR44658.1    NWSH01000027    PCG80587.1    BABH01021020    BABH01021021    BABH01021022    BABH01021023    ODYU01000342    SOQ34930.1    AGBW02009994    OWR49387.1    NWSH01000141    PCG79123.1    KQ459718    KPJ20255.1    ODYU01007811    SOQ50892.1    BABH01020992    BABH01020993    GDQN01010985    JAT80069.1    PCG80589.1    KQ461181    KPJ07590.1    AGBW02012803    OWR44415.1    KZ149937    PZC77098.1    ODYU01000739    SOQ35985.1    PYGN01000422    PSN46644.1    BABH01031543   

Proteomes

UP000053268    UP000218220    UP000007151    UP000005204    UP000053240    UP000245037    + More

PRIDE

H9IWW1    H9IWV3    H9JCE3   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05485   THAP

Interpro

IPR012934   Znf_AD        + More
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR006612   THAP_Znf       
IPR038441   THAP_Znf_sf       

SUPFAM

SSF57667   SSF57667       

Gene 3D

3.30.40.180    

ProteinModelPortal

A0A194QHT0   A0A2H1W417   A0A2W1BBI5   A0A2W1BNQ1   A0A2A4JVY9   A0A1E1W0D9   + More
A0A2W1BE97   A0A2H1VK03   A0A1E1W0D1   A0A212ET42   A0A2A4K8P9   H9IWW1   A0A2H1V264   A0A212F6M7   A0A2A4K5S6   A0A0N1IQ78   A0A2H1WDF0   H9IWV3   A0A1E1VZG4   A0A2A4K955   A0A194QRI4   A0A212ESE3   A0A2W1BQ38   A0A2H1V556   A0A2P8YR05   H9JCE3  

PDB

2I13     E-value=5.87035e-07,     Score=128

KEGG

101738042    no KO assigned | (RefSeq) zinc finger protein 235-like

GO

GO:0005634   GO:0003676   GO:0008270   GO:0016021   GO:0003677   GO:0003700   GO:0046872   GO:0043565   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

Length:

386

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00078

Exp number, first 60 AAs:

0.00077

Total prob of N-in:

0.02341

outside

1  -  386

 

 

Pi

16.824608

Theta

18.862501

Tajima's D

-0.574393

CLR

0.001038

CSRT

0.224838758062097

Interpretation

Uncertain