Gene

KWMTBOMO16431

Pre Gene Modal

BGIBMGA013826

Annotation

PREDICTED:_myb_transcription_factor_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr28(-):9612200-9637857      View in EpiBrowser

Transcription factor

MYB

Location in the cell

Nuclear   Reliability : 4.276

CDS

ATGTTCATTGTCAACAGAAAAAGCGGCTATGACAGCGAGACGAGCGAATATTCAGAGGACTCGACGGCGGCTTACGAGGATGTGCAGACTTCAACCAAAAGCACTGGGTCGAGGAAGAATATCAACAGGGGAAGGTGGAGTAAAGAGGAGGACAAGAAACTAAAAGCATATGTTAGGACTTACAAAGAGAATTGGGAGCGCATAGCGGCCGAGTTTCCTGACCGTTCCGACGTTCAGTGCCTTCAAAGATGGACGAAAGTCGTCAACCCTGAACTAGTCAAAGGCCCTTGGACCAAAGAGGAAGACGAGAAAGTCGTTGAGCTGGTCGCGAAATACGGACCGAAGAAATGGACTTTGATAGCCCGACATCTCAAAGGGAGGATAGGGAAGCAGTGCAGAGAGAGATGGCACAATCATCTGAACCCCTGTATAAAGAAGACGGCGTGGACGGAGCACGAGGACAGAGTGATATATCAGGCCCACCAGCAGCTCGGGAACCAGTGGGCGAAGATCGCCAAGCTGTTACCGGGACGAACGGACAACGCAATAAAGAACCATTGGAACTCGACGATGCGTCGTAAATACGACATGGACTTGTTGGACACGCATGAGAGGCGGAAGGGCAAGGCGAAGGCTCGGTTCAACGACGGAGCCCCGGCCGCCGCCCCGGCGGACGAGCGCGTCCAGGTCTCCTACATCGACCAAACCTGGTCGGACCCGTTCAACGAGTCAACCCAGAGCAACGCGTCCAGTACGAGCCAGCCCTCGAAGCAGATGCTCCACTTCCGCCAGGTGCTGAAGAACCAGCTGACGAACCTGCAGCAGCAGCCCCGGCCGGAGTCCCCGGGCCGCGCCGGGCTCGTGGCCGCCGACGCAGAGATCGTTGATTCTCCCTTCAAGTTCGTGAACATCGAGAACCTGCCGACGGACTCGCCGCTCAAGGGCTACCTGAGCCAAGCCCCCGCGGCGGCCGACCCCGGCGGAGACTCCATGTCCTTCTCGATGCACCAGAAGGAGCTGCAGGAGATAGTGGTGCCGGAAGTGTACACGTCGCCGGGCCGGAAGCTGCCGGACGCGAACTCCCCGCCCCCCATCCTGAGGCGGAAGAACAAGAAGCAGATGACGCCTAACCCCAACAACTGGATGGAGTCGATGAGCAAGCTTTCTGAGTTCGGCGCCACCCCGCTGAAGGCGCTGCCGTTCTCCCCCTCGCAGTTCCTCAACTCCCCCCTGGCGCTGCACGCGGCAGACTCCACCCCGCTCCGGGACGCGCACGCCAAGGAGTGGAGCTCGAGCCCGCTGCTGCACACGCCGACGCCGGCCAACAACATCACCCCGGTGCACGTCAACAGGTTCAAGACCAACACTCCCAAAACGCCGACCCCGTTCAAGATCGCGATGGCGGAAATAGGCAAGAAGTCCGGTCTGAAGTACGAGCCGTCCAGCCCCGGACTCCTGGTGGAGGACATCACGGAGATGATCCAGCGGGAGGAGAAGTCGGACAGCACCGTGCAGCTCAGCGACTCCCTGCTCTCCTGCGCCGCCGAGCACGAGGGGGGCGCCCAGGGTAACGACTCCGGCATCGGCAGCCTGAAGCGGCACAGCCTGGACGGGCGGGCGGACGGCAAGGAGAACCTGGCCGCCACGCACAAGCGCGCACGGAAGGCGCTGGCCGCCTCCTGGGGCGCCGCCACCAGCACGCCGCGACACGACGCGCTCGAGACGCCCAGCAAGACCCTGGTCGGGGACAGCTCGGTGCTGTTCTCGCCGCCGTCTATCGTCAAGCACTCTTTGCTGGAGGAGTCCACCAGCCTGCACAGCTACATGAGCGCGGACAGCACGCCCGACGCGCAGCTGGACATCGAGTCCGTCATCAGCGAGACGACCAAGATTGGCGACGACGGCACCTCGGTGACGGTCAAAAGATCCGCCGTCCGGTCAATACGGTTCGAAGACGACCAACCCGACAATGAGTCTGCAGAGGAAATATCCTTTATATTGAGCGACAGTAAGTGGGAGCAGTACGCTTGCGGTAAGACCCAGGATCAAGTGGAATTGACGATGTTAGCCCACCAGTTCCTGAGGAAGACGGCTCTCAAACCGCGCTCGCTCAATTTCTAG

Protein

MFIVNRKSGYDSETSEYSEDSTAAYEDVQTSTKSTGSRKNINRGRWSKEEDKKLKAYVRTYKENWERIAAEFPDRSDVQCLQRWTKVVNPELVKGPWTKEEDEKVVELVAKYGPKKWTLIARHLKGRIGKQCRERWHNHLNPCIKKTAWTEHEDRVIYQAHQQLGNQWAKIAKLLPGRTDNAIKNHWNSTMRRKYDMDLLDTHERRKGKAKARFNDGAPAAAPADERVQVSYIDQTWSDPFNESTQSNASSTSQPSKQMLHFRQVLKNQLTNLQQQPRPESPGRAGLVAADAEIVDSPFKFVNIENLPTDSPLKGYLSQAPAAADPGGDSMSFSMHQKELQEIVVPEVYTSPGRKLPDANSPPPILRRKNKKQMTPNPNNWMESMSKLSEFGATPLKALPFSPSQFLNSPLALHAADSTPLRDAHAKEWSSSPLLHTPTPANNITPVHVNRFKTNTPKTPTPFKIAMAEIGKKSGLKYEPSSPGLLVEDITEMIQREEKSDSTVQLSDSLLSCAAEHEGGAQGNDSGIGSLKRHSLDGRADGKENLAATHKRARKALAASWGAATSTPRHDALETPSKTLVGDSSVLFSPPSIVKHSLLEESTSLHSYMSADSTPDAQLDIESVISETTKIGDDGTSVTVKRSAVRSIRFEDDQPDNESAEEISFILSDSKWEQYACGKTQDQVELTMLAHQFLRKTALKPRSLNF

Uniprot

A0A3S2LW12   A0A2A4K2N7   A0A2A4K4C8   A0A2A4K432   A0A2A4K2M8   A0A2A4K2M6   + More
A0A2W1BJM8   A0A2H1VGY9   A0A2A4K4D2   A0A2A4K390   A0A212FK34   A0A194PIH5   A0A2A3EQZ6   A0A0L7QXB3   E2AU28   A0A151JY92   A0A1J1IV61   A0A195BCK3   A0A154NZ50   A0A195DPD5   F4X180   A0A158NFI0   A0A195CV42   A0A151WNW3   A0A3L8E5M5   A0A0M9A517   A0A026WGG2   A0A0P6JNC8   A0A1B6GVG6   A0A2H8THF9   A0A1B6I003   A0A2S2PSS9   A0A0K8SHY4   A0A0A9VZK2   A0A1B6I7M2   A0A0K8T3Y7   A0A0A9VV14   A0A088A0Q8   A0A0K2TVP5   A0A2Y9QW46  

Pubmed

28756777    22118469    26354079    20798317    21719571    21347285    + More
30249741    24508170    25401762   

EMBL

RSAL01000157    RVE45562.1    NWSH01000196    PCG78507.1    PCG78510.1    PCG78513.1    + More
PCG78505.1    PCG78511.1    KZ150002    PZC75282.1    ODYU01002501    SOQ40077.1    PCG78512.1    PCG78509.1    AGBW02008152    OWR54094.1    KQ459602    KPI93216.1    KZ288201    PBC33559.1    KQ414705    KOC63179.1    GL442767    EFN63071.1    KQ981494    KYN40936.1    CVRI01000061    CRL04063.1    KQ976514    KYM82283.1    KQ434783    KZC04955.1    KQ980662    KYN14706.1    GL888528    EGI59752.1    ADTU01014508    ADTU01014509    ADTU01014510    ADTU01014511    KQ977279    KYN04392.1    KQ982893    KYQ49592.1    QOIP01000001    RLU27605.1    KQ435732    KOX77377.1    KK107260    EZA54154.1    GDIQ01002422    JAN92315.1    GECZ01003394    JAS66375.1    GFXV01001684    MBW13489.1    GECU01027463    JAS80243.1    GGMR01019922    MBY32541.1    GBRD01013097    JAG52729.1    GBHO01045539    GBHO01045537    JAF98064.1    JAF98066.1    GECU01024794    JAS82912.1    GBRD01005926    JAG59895.1    GBHO01045541    GBHO01045536    JAF98062.1    JAF98067.1    HACA01012524    CDW29885.1   

Proteomes

UP000283053    UP000218220    UP000007151    UP000053268    UP000242457    UP000053825    + More
UP000000311    UP000078541    UP000183832    UP000078540    UP000076502    UP000078492    UP000007755    UP000005205    UP000078542    UP000075809    UP000279307    UP000053105    UP000053097    UP000005203    UP000248480   

Pfam

PF09316   Cmyb_C        + More
PF00249   Myb_DNA-binding
PF07988   LMSTEN

Interpro

IPR015395   C-myb_C        + More
IPR017930   Myb_dom       
IPR015495   Myb-like_TF       
IPR001005   SANT/Myb       
IPR009057   Homeobox-like_sf       
IPR012642   Tscrpt_reg_Wos2-domain       

SUPFAM

SSF46689   SSF46689       

CDD

cd00167  SANT

ProteinModelPortal

A0A3S2LW12   A0A2A4K2N7   A0A2A4K4C8   A0A2A4K432   A0A2A4K2M8   A0A2A4K2M6   + More
A0A2W1BJM8   A0A2H1VGY9   A0A2A4K4D2   A0A2A4K390   A0A212FK34   A0A194PIH5   A0A2A3EQZ6   A0A0L7QXB3   E2AU28   A0A151JY92   A0A1J1IV61   A0A195BCK3   A0A154NZ50   A0A195DPD5   F4X180   A0A158NFI0   A0A195CV42   A0A151WNW3   A0A3L8E5M5   A0A0M9A517   A0A026WGG2   A0A0P6JNC8   A0A1B6GVG6   A0A2H8THF9   A0A1B6I003   A0A2S2PSS9   A0A0K8SHY4   A0A0A9VZK2   A0A1B6I7M2   A0A0K8T3Y7   A0A0A9VV14   A0A088A0Q8   A0A0K2TVP5   A0A2Y9QW46  

PDB

1H89     E-value=3.64925e-62,     Score=607

KEGG

100216495    K09420 transcriptional activator Myb | (RefSeq) Myb, BmMYB; Myb transcription factor

GO

GO:0003677   GO:0005634   GO:0016021   GO:0006355   GO:0016758   GO:0016999   GO:0008270   GO:0043565   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR45614  

Subcellular location

Nucleus  

Length:

706

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00029

outside

1  -  706

 

 

Pi

250.455602

Theta

169.470144

Tajima's D

1.486872

CLR

0.161646

CSRT

0.786060696965152

Interpretation

Uncertain