Silkworm Genome Informatics Database

Gene

KWMTBOMO16132

Pre Gene Modal

BGIBMGA004530

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr27(-):9983737-10016145 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.353 PlasmaMembrane Reliability : 1.746

CDS

ATGAAGTCAGTGTCGGAACGTTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGTCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGACGCCTTCAGCTCTAACACTAGGAGCAGGCTTAGGGACCTCGGTCCGAGAAGTTGGGGCCTCGCCGCAAGGCGAGTGTTTTCAAGACCCGGGGCCGCCCCACCTGGGTACTCAGCGATCATGGACGCTGTATTCGCGGAATTCCTCCGACTTCGCCACCCACAGCACGCCTCGGAGTTTTTGGCCTTCAAGGCCAATCACACTGCGAGCCCTCTCGAGGACTCCGCCGCGCTCGCTGCTCCTGCGTCGCCTGTACCTGCGTGCAGAGCTTCTGCATTGAGCACCGCAGCCTCTGTCGTGCCTGCCGCTCCCGTGTCGCCTATACTGGCGAGAAAAGCTGCTGCGTCGTCCGCCGTGACCATCGTTTCAGCTGAGCGATCATCCGCGGCCTCCGTCGCGCCCTCTAAAACACCTACACTTGCTCGTAGGTCGCCTGCACCCGCCTCCTCGTGCTCCGACTCTGACTCGGACATGGAGGTCGACCTCGCCCCCGCCTCATCGACGGATGGATTCACCCTGGTACAGAAGGGTAAGAAGCGTGCCGCGGAGTCTCGAGCTCCCGCGGCCGCTAAAATTAGCAAAGCCGTGAACGCGTCGCGCCCCCGCCCTCAGACTCCCGTTGCGCCCCCAGCCCGTGCCACTCCGTCGCCGCGTCCGGTGGCACAAAATAAAACCCAGACCCCTCCCCCGGTTATCCTTCAGGAGAAGGCAGCTTGGGATCGAGTTTGCCTGGCCCTTAAGGCCAAAAATATAAATTTCACGAATGCCCGTAACCTCGCGAACGGCATTCAAATTAAGGTTCAAACACCCGACGACCATAGGGCCCTCTCTTCTTACCTCCGTAAGGAGCGTATAAGTTTCCATACGTATACGCTCCAGGAGGAGCGCGAACTCCGCGTTGTAATACGCGGAATCCCTAAAGAGTTAGATGTAGAGCTCGTAAAAGCCGACCTGTTAGAACAAGGCCTACCAGTGAATTCTGTGCACCGTATGCACACCGGTCGCGGTAGGGAGCCATATAATATGGTTCTAGTCGCTCTCCAGCCTACCCCCGAGGGTAAGAAAATCTTTAACACACAGACCGTCTGTAGGCTCTCTGGTATCGCTGTCGAAGCCCCCCATAAAAAAGGCACTCCTAGCCAGTGCCATAACTGTCAATTGTACGGGCACTCTTCCCGTAACTGTCACGCGCGCCCCCGATGTGTTAAGTGTTTGGGCGATCACGCCACGGCCCTCTGCGCTCGCGACCAAAAAACCGCGACGGAACCGCCTAGCTGCGTCCTGTGTCGAACACAGGGTCACCCCGCGAATTACCGTGGTTGCCCCCGAGCCCCTAAAATAAATCGCCGCGTCGCCCGCCAAAACCGCCTCCGAGCTTCCGGCCCAGACATCAAAGCCTCGGCACCCTCTGCGTCGCAGGCTAAGCCAGCGTTCGTTCCGGCGGCGGTGCCCAGTGTCTCGGCCTGGGCAAAACCGCTGCCGTACACGAACACGGCTACAACTCCCTCCTCCGCGATTCGTCCCGCCCCCGCGACTCGTCCCTCTCCCGCGACTTGCCCTCCGACCGCGTCCGACAATCTCGCTTTAGCGATCGACTTCTTTCAGTCGATCGACTTTGAGCGCGTTAACGCTTTGGGCGACGCCATTCGCGCTGCCTCCACTGCACAACACTTTATCGCCGTTGTGCAAGAATACGCCGACGAGACCCTACTTAAGCCCGCGCGCCGTGACCCTAAAATCGCGAACTATAACATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCATACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTTCCGTTTAGTCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCGTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAGCAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGCCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATCCGTGCGTACGATAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCACCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCTCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCATGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCCAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAATCCATACCCTGGGTCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCCTCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGGATTTGGTCATAACCAAAATGAGGGCGATAGCGTTCACACCTTAATAGAAAAATGTGCCAAGAATAAACTTGCTTATACGCCATATGAGACAGGTATCCCTGATAACCACTACAGCATGGCGTCGATAAACAGCTGCGGGGAATTGAAGAGTCCCGGGGACCCAGAGAAAAAGATCCCGGATACCGACGCTGAGAAACAACCGCTTTCCGGGGAAAAAGAAGAAAAATTGTGGACCACATTGATGCAGGTAGCTGTACCCTTCTTTATAGCTGGCTGCGGTACCATCGGAGCTGGTTTGGTGCTCGGCAAAGTTAGGGATTGGGATGTTTTTATAAACATATCGGCCATTTTCGTTCTTGTGCCCTCACTGTCAGGACTAAAGGGTAACCTGGACATGTGTCTCGCATCTCGACTGTCAACGCAGGCGAATTTGGGCAACATGGACTCCACGAAGGAGGTCATCTCGATGGTCGTTGGAAACATATCATTGGTTCAGGTTCAAGCTATAGTGGCTGCGACTGTGGTCTCCATATTCGCCATCGTGGTGAACACGATCACGGACCGCGCCATCTTCGGGCCCTATGTCCTCCTGCTGGTCGCGTGCGCCGTCTTCACTGCTACCACCACTTGCTTTGTGTTGGATTTCGTGATGGTAATGGTGATATACGCGTCGCACAGGTTCAAGGTGAACCCGGACAACGTGGCGACTCCGCTGGCGGCCTCCATCGGAGACATCGTCAGCAACACTGTGCTAGCCGTCACCGCCCAGTACATGTACGAGCAGATCCAGGTGTCTCTGTGGCAGCCCATCGCGTTGATCTGCGTGTACTACAGCCTCCTCCCGCTGTGGGTGTTCATCGTTTGGAGGAACAAGTACACCAAGACCGTCCTCACCAGCGGCTGGACCCCCGTCATCTCCGCCCTGTTCATAAGCGGTATCGGCGGTATAGTCCTGGACCAGGCCGTCGATTACTTCCGAGGGTACGAAGTGTTCCAGCCGATCGTGAACGGGATCGGGGGGAACCTGGTGTGCGTACAGTCGTCCCGGCTGGCCACGCACCTCCACCAGACCGCCATCCCCGGGATCCTGCCGGAGAACACTAAGATCATTGAGTGGCCTTGGAAGACCTTGTTCTTTGGAACGACCGCGGCGAAGGTGGCTCGCATGCTGCTGATCCTGGCCGTCTTCGGGCAGATAATCTTCATGGTGGTCGCGGACTTCGTGTACCAGGGGACGGTCACCATCCAGTTCGCGTTCGGCATCACGTACCTCACGTGCGCCCTGCTGCAGGTGATGCTGCTCCTTTACCTGGCCTACATCGTGATCCACTTCATGTGGAAGAGGAAGAAGGACCCCGACAATGCCGCCATCCCCTACCTCACGGCGCTCGGAGACCTCCTCGGCTCCGTGTTCCTGGGACTCGCCTTCGTCATCCTGTCCCTCTTCGGACTGGAATACGGCAATAATGTCCAGTGA

Protein

MKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGVSHRRRPRHVLTDPSDPITFALDAFSSNTRSRLRDLGPRSWGLAARRVFSRPGAAPPGYSAIMDAVFAEFLRLRHPQHASEFLAFKANHTASPLEDSAALAAPASPVPACRASALSTAASVVPAAPVSPILARKAAASSAVTIVSAERSSAASVAPSKTPTLARRSPAPASSCSDSDSDMEVDLAPASSTDGFTLVQKGKKRAAESRAPAAAKISKAVNASRPRPQTPVAPPARATPSPRPVAQNKTQTPPPVILQEKAAWDRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEGKKIFNTQTVCRLSGIAVEAPHKKGTPSQCHNCQLYGHSSRNCHARPRCVKCLGDHATALCARDQKTATEPPSCVLCRTQGHPANYRGCPRAPKINRRVARQNRLRASGPDIKASAPSASQAKPAFVPAAVPSVSAWAKPLPYTNTATTPSSAIRPAPATRPSPATCPPTASDNLALAIDFFQSIDFERVNALGDAIRAASTAQHFIAVVQEYADETLLKPARRDPKIANYNMVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSIPSPQDTAEAIDIVTSHITSTLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCMPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAAPALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQSIPWVRKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPGFGHNQNEGDSVHTLIEKCAKNKLAYTPYETGIPDNHYSMASINSCGELKSPGDPEKKIPDTDAEKQPLSGEKEEKLWTTLMQVAVPFFIAGCGTIGAGLVLGKVRDWDVFINISAIFVLVPSLSGLKGNLDMCLASRLSTQANLGNMDSTKEVISMVVGNISLVQVQAIVAATVVSIFAIVVNTITDRAIFGPYVLLLVACAVFTATTTCFVLDFVMVMVIYASHRFKVNPDNVATPLAASIGDIVSNTVLAVTAQYMYEQIQVSLWQPIALICVYYSLLPLWVFIVWRNKYTKTVLTSGWTPVISALFISGIGGIVLDQAVDYFRGYEVFQPIVNGIGGNLVCVQSSRLATHLHQTAIPGILPENTKIIEWPWKTLFFGTTAAKVARMLLILAVFGQIIFMVVADFVYQGTVTIQFAFGITYLTCALLQVMLLLYLAYIVIHFMWKRKKDPDNAAIPYLTALGDLLGSVFLGLAFVILSLFGLEYGNNVQ

Uniprot

NA

ProteinModelPortal

NA

KEGG

101746660 K15122 solute carrier family 41 | (RefSeq) solute carrier family 41 member 1-like

GO

GO:0006812 GO:0008324 GO:0046872 GO:0016311 GO:0016791 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Length:

2016

Number of predicted TMHs:

9

Exp number of AAs in TMHs:

213.53568

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00085

outside

1 - 1604

TMhelix

1605 - 1627

inside

1628 - 1633

TMhelix

1634 - 1651

outside

1652 - 1685

TMhelix

1686 - 1708

inside

1709 - 1720

TMhelix

1721 - 1743

outside

1744 - 1790

TMhelix

1791 - 1813

inside

1814 - 1819

TMhelix

1820 - 1842

outside

1843 - 1910

TMhelix

1911 - 1933

inside

1934 - 1944

TMhelix

1945 - 1967

outside

1968 - 1986

TMhelix

1987 - 2009

inside

2010 - 2016

Pi

234.595682

Theta

162.100184

Tajima's D

1.385322

CLR

0.266039

CSRT

0.756562171891405

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree