Gene

KWMTBOMO16068

Annotation

PREDICTED:_zinc_finger_protein_267-like_[Amyelois_transitella]

Location

Bomo_Chr27(+):8056805-8063950      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.488

CDS

ATGCAAGATGTAAATATTGAATACCGTAATGAAAATATTTTTTGTGAAACTGAGAGCAATGATAATACTGAGATGCAGTTAAAGCAAGAAAACTTGTTATCTACAACAATTTATCCAAACTCTTTTCAAATTACAAAGAAAGATTTCGATTTTCATTGTTCATTGTGCCTTAAAAGTTTTCAAAGACCATCTCTGTTATTGGAACACAGGGTGCACTGTATTGATGAGAAATCAAATATCGAATTAGATATTGATAAGTATGACCAATCTACAAATAAACAACTTGTAGATAATAAAGCAGAGAAAGAAAATGCCACCAAAATTCTGAAAGAAAAATATGAAACTAAAATGACAAATTCGAATTTAGATAACAGTAAATGTGATGAAAAGTATTCTATAGTCAGTAGCGGAGATCAATTTAAGTTTAAATGTAATTTATGTGAGAAATCTTTCAATACAAAAAAAGCAGTTGTCAGACATATTGTTAGTCATACAAATGAAAGACCGTTTGTCTGTAATATATGTGGTAGAACATATAAAACTTCTGGGGAAATATTAAGACACAAACGAATACACAAATCTGCTGAATTAATTTGTTCATATGAATGCGGATATAGAACATCATACAGAGGTGCACTTAAAACACACGAGAAGACTCATCAACCCTCACAGTATAACTATAAATGTGAAACCTGCGGAAAAGGTTTTCAAGTTTTAACAATGTATAAGCAACACCAGAACGTGCATGAAGGGTTGAAGCCATTCGTGTGTAGCATGTGCGGGGTGGCTTTCCATATGGACAGGTATTTAAAAGCACACCTGCAGAATGTCCATAACAAGTCCACAAATGGCAAATGTTTCATATGCATACACTGCTGCTTACCACTGGACAGTCTTCTAGAACTGAAAATGCACAAGATTGAGAAACACGGCCTCAGAACAACCTGCCTTTGTGACGTGTGCGGGAAAGTCTTCAAGAACACAGAAAGGTTGAAGAACCATAAAACGACCCATTCGAAATTGAAACCTTACACTTGTGGTGTCTGCAACAAAACGTTTGCTAAGAAGTTTCACTTGAAAGTACACGAGAACACGCACACAGGCGAACGGAAGCATTCGTGTGGAGTTTGCGGACAGTCCTTCGTACAGAGAAGCTCTTTACTACGCCACAATAAACGGCGCCACCAAGATCTTAAGAGTGCAAATGAAAAGTTGGAACATAATATGTGA

Protein

MQDVNIEYRNENIFCETESNDNTEMQLKQENLLSTTIYPNSFQITKKDFDFHCSLCLKSFQRPSLLLEHRVHCIDEKSNIELDIDKYDQSTNKQLVDNKAEKENATKILKEKYETKMTNSNLDNSKCDEKYSIVSSGDQFKFKCNLCEKSFNTKKAVVRHIVSHTNERPFVCNICGRTYKTSGEILRHKRIHKSAELICSYECGYRTSYRGALKTHEKTHQPSQYNYKCETCGKGFQVLTMYKQHQNVHEGLKPFVCSMCGVAFHMDRYLKAHLQNVHNKSTNGKCFICIHCCLPLDSLLELKMHKIEKHGLRTTCLCDVCGKVFKNTERLKNHKTTHSKLKPYTCGVCNKTFAKKFHLKVHENTHTGERKHSCGVCGQSFVQRSSLLRHNKRRHQDLKSANEKLEHNM

Uniprot

A0A3S2NZT7   A0A1E1WNW0   A0A067R970   A0A2J7Q3X6   A0A067RIG0   E0VU67   + More
A0A3P8N721   A0A0L8HSJ6   F7EZW6   A0A2J7Q3X9   A0A091VWV8   G1RV17   A0A0L8HUJ5   A0A3Q2Z7R4   A0A2K6BLQ9   G1M2Q0   A0A3Q7U9T3   A0A1S3L4R0   A0A3Q7NMX9   A0A2K5WG10   A0A2K5WG18   F6ZJQ6   G7NLE0   A0A0L8HHH4   A0A0L8FT70   A0A2J7Q3W8   A0A3P8N9J3   L8YF42   G3VEL2   A0A0L8GJ02   K7FAN6   A0A2P8YKW3   A0A0L8IF58   A0A0L8HUJ2   A0A3B4D2S2   S7MRM6   A0A0L8H3U1   A8DZC6   F7H9M0   F6Q1S4  

Pubmed

24845553    20566863    17495919    20010809    17431167    22002653    + More
23385571    21709235    17381049    29403074    12477932    23594743    25243066   

EMBL

RSAL01000078    RVE48737.1    GDQN01002370    JAT88684.1    KK852613    KDR20226.1    + More
NEVH01018421    PNF23291.1    KDR20225.1    DS235780    EEB16923.1    KQ417370    KOF92238.1    PNF23269.1    KK734386    KFR07649.1    ADFV01123058    ADFV01123059    ADFV01123060    KQ417280    KOF92862.1    ACTA01034389    ACTA01042388    ACTA01050388    AQIA01035125    AQIA01035126    AQIA01035127    AQIA01035128    AQIA01035129    AQIA01035130    AQIA01035131    JSUE03021353    CM001271    EHH29865.1    KQ418204    KOF88225.1    KQ426737    KOF67896.1    PNF23267.1    KB360887    ELV13625.1    AEFK01181069    KQ421646    KOF76943.1    AGCU01030840    AGCU01030841    AGCU01030842    AGCU01030843    AGCU01030844    AGCU01030845    AGCU01030846    AGCU01030847    PYGN01000522    PSN44891.1    KQ415854    KOG00078.1    KOF92864.1    KE162096    EPQ07054.1    KQ419395    KOF83724.1    AL929017    BC153394    AAI53395.1    GAMT01006759    GAMS01005884    GAMR01005897    GAMQ01006602    GAMP01004330    JAB05102.1    JAB17252.1    JAB28035.1    JAB35249.1    JAB48425.1   

Proteomes

UP000283053    UP000027135    UP000235965    UP000009046    UP000265100    UP000053454    + More
UP000002280    UP000053605    UP000001073    UP000264820    UP000233120    UP000008912    UP000286640    UP000087266    UP000286641    UP000233100    UP000006718    UP000011518    UP000007648    UP000007267    UP000245037    UP000261440    UP000000437    UP000008225   

Pfam

PF07776   zf-AD        + More
PF00096   zf-C2H2
PF01352   KRAB

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR011031   Multihaem_cyt       
IPR011017   TRASH_dom       
IPR001965   Znf_PHD       
IPR003656   Znf_BED       
IPR017114   YY-1-like       
IPR036051   KRAB_dom_sf       
IPR001909   KRAB       
IPR017921   Znf_CTCHY       
IPR017125   Znf_PRDM5-like       

SUPFAM

SSF57667   SSF57667        + More
SSF109640   SSF109640       

CDD

cd07765  KRAB_A-box

ProteinModelPortal

A0A3S2NZT7   A0A1E1WNW0   A0A067R970   A0A2J7Q3X6   A0A067RIG0   E0VU67   + More
A0A3P8N721   A0A0L8HSJ6   F7EZW6   A0A2J7Q3X9   A0A091VWV8   G1RV17   A0A0L8HUJ5   A0A3Q2Z7R4   A0A2K6BLQ9   G1M2Q0   A0A3Q7U9T3   A0A1S3L4R0   A0A3Q7NMX9   A0A2K5WG10   A0A2K5WG18   F6ZJQ6   G7NLE0   A0A0L8HHH4   A0A0L8FT70   A0A2J7Q3W8   A0A3P8N9J3   L8YF42   G3VEL2   A0A0L8GJ02   K7FAN6   A0A2P8YKW3   A0A0L8IF58   A0A0L8HUJ2   A0A3B4D2S2   S7MRM6   A0A0L8H3U1   A8DZC6   F7H9M0   F6Q1S4  

PDB

5WJQ     E-value=1.1224e-25,     Score=289

KEGG

101746135    no KO assigned | (RefSeq) gastrula zinc finger protein XlCGF7.1-like

GO

GO:0008270   GO:0003677   GO:0005634   GO:0003676   GO:0046872   GO:0006355   GO:0000976   GO:0003700   GO:0045944   GO:0045892   GO:0043565   GO:0045893   GO:0043066   GO:0008284   GO:0045648   GO:0005730   GO:0033674   GO:1901989   GO:0045654   GO:0072707   GO:0030247   GO:0016020   GO:0022857   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

Length:

409

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00393

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03268

outside

1  -  409

 

 

Pi

204.557526

Theta

162.435971

Tajima's D

0.596621

CLR

0

CSRT

0.539223038848058

Interpretation

Uncertain