HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.0	0.7	0.0035	0.21	1	20	51	70
2	19.7	0.7	1.2e-05	0.00075	1	23	142	164
3	20.8	0.4	5.9e-06	0.00035	1	23	170	192
4	11.2	0.4	0.0065	0.39	3	23	199	220
5	16.8	0.7	0.00011	0.0064	1	23	227	249
6	9.8	0.6	0.018	1.1	1	23	255	278
7	15.8	2.7	0.00022	0.013	3	23	318	338
8	22.2	2.7	2.1e-06	0.00012	1	23	344	366
9	18.7	2.1	2.7e-05	0.0016	1	23	372	395

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0035
                   EEETTTTEEESSHHHHHHHH CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHi 20
                   + C+ C ksF r+s+L  H+
  KWMTBOMO16068 51 FHCSLCLKSFQRPSLLLEHR 70
                   78****************96 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C ksF++k   +rHi +H
  KWMTBOMO16068 142 FKCNLCEKSFNTKKAVVRHIVSH 164
                    8*******************998 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 5.9e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg+++k++ +  rH r+H
  KWMTBOMO16068 170 FVCNICGRTYKTSGEILRHKRIH 192
                    89*******************99 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.0065
                    ET.TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 Cp.dCgksFkrksnLkrHirtH 23 
                    C+ +Cg++ + +  Lk+H +tH
  KWMTBOMO16068 199 CSyECGYRTSYRGALKTHEKTH 220
                    999******************9 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 0.00011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ Cgk F    ++k+H+++H
  KWMTBOMO16068 227 YKCETCGKGFQVLTMYKQHQNVH 249
                    9********************99 PP

  == domain 6  score: 9.8 bits;  conditional E-value: 0.018
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cg  F     Lk+H++  H
  KWMTBOMO16068 255 FVCSMCGVAFHMDRYLKAHLQNvH 278
                    89******************9988 PP

  == domain 7  score: 15.8 bits;  conditional E-value: 0.00022
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cgk+Fk+ + Lk+H  tH
  KWMTBOMO16068 318 CDVCGKVFKNTERLKNHKTTH 338
                    9*****************999 PP

  == domain 8  score: 22.2 bits;  conditional E-value: 2.1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+F  k +Lk+H +tH
  KWMTBOMO16068 344 YTCGVCNKTFAKKFHLKVHENTH 366
                    9*********************9 PP

  == domain 9  score: 18.7 bits;  conditional E-value: 2.7e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++Cg+sF ++s+L rH ++ H
  KWMTBOMO16068 372 HSCGVCGQSFVQRSSLLRHNKRrH 395
                    68*****************99988 PP