Silkworm Genome Informatics Database

Gene

KWMTBOMO16036

Pre Gene Modal

BGIBMGA004594

Annotation

PREDICTED:_zinc_finger_protein_41-like_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr27(-):7017007-7025835 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.249

CDS

ATGGCGTTATTACCCGTTAAGATTGACAAGAACGATCGGCTGCCCCAGAAGATTTGTGATCATTGCAGTCGTAAAGTTAACGAGTTTTATGAGTTTTGTAATGAAACTATTGTAGTGGAAAATAAGCTACAAGCTTTCTTAAAACAGCAAGGAACACACAACACAACTGTAGATCTCATACTTGGAAAACCGAAGACACCAATTCTACCTCCTAAAACATGTGAACAAAGCCATCGAATTGATGAAGGTATACCAGTAGATGAAGTTGTCAAAATTAAAGTTGAAACGCCAAAAGAAATAAAACAAGAAGATATTGAAGCAGAGGAGAACTATCACTACTCAGATGACAGTGATGATGTCTATTTAACAAATCTAAAAGCAAAGAAAAACGATATTGATGTAATAAGATTAAAAAACAGAGAGAAACAGGACGTAAAAAGTAATGGTGTGAAGAAAAATTCATGCGGAAACAAGTCTGAGCTTATGGAAGATTGGTCGATTTTACTAAAGCAGTTCCCTGAGGGCCCTTATAATTTGGTCGACGAAACAGATGTACCAGTTAAACAGGAAGTCAAAGATGAAAACAGTGCAGATTTCGATGACTTGCCTAACTTAAAAGACAAATATCGTTGTTGTATTTGTCTAAAGAATTGCAAGTTTAAGAGTACATTGTTGAAGCACTATAAAACACACGGAAAGGATATTCCAAAGACGAATAATCTTCAGGTGCCTCCAATACCTGATCAGAATCCATTAAAATGCACGAGATGTAGAAAGTCTGTAAAGAAAGATACGTGGGCGGAACATTGGCAGAACCATTGGAAACGCGACCACCGGCCCTACCGATGCGCGTTGTGCGACAAATCGTTCACGTCTTCACAACAAGTCATGGTGCACGGTCTGTCGCACAGCCACAATCCAGTCGACGACGAGGCCATGCAGCTGAAGAAGCAAAATCGTTATGTTTGTGATTTTTGTCCTGAAGAATTTATGTACATGAGATGTCTGCAGGCCCACCGGACGAACGCGCACCCTGAGTCCGCCTCGAAGGCCGTGACGCACCGCTGCTGGAAGTGCTCGCGGCAGTTCGCGCACCTCAATTCCCTGCGGCGGCACTTTATGACGCACACCGGCGAGAGGAACTTCCTGTGCAACGTGTGCGGGAAGGCAATGAGCTCGAGGGACCATCTCAAGCTACACATAAATATACACACCGGCTACAAGCCAAACGTTTGTTCGACATGCGGTAAGGGTTTCGTCAAGAAGAGCAACCTGAAGCTGCACGAGCGCGTCCACAGCGGCGAGAAGCCGTACGTGTGCTCGCACTGCGGGAAGGCGTTCAGCCAGCGATCGACGCTCGTCATACACGAGAGGTGA

Protein

MALLPVKIDKNDRLPQKICDHCSRKVNEFYEFCNETIVVENKLQAFLKQQGTHNTTVDLILGKPKTPILPPKTCEQSHRIDEGIPVDEVVKIKVETPKEIKQEDIEAEENYHYSDDSDDVYLTNLKAKKNDIDVIRLKNREKQDVKSNGVKKNSCGNKSELMEDWSILLKQFPEGPYNLVDETDVPVKQEVKDENSADFDDLPNLKDKYRCCICLKNCKFKSTLLKHYKTHGKDIPKTNNLQVPPIPDQNPLKCTRCRKSVKKDTWAEHWQNHWKRDHRPYRCALCDKSFTSSQQVMVHGLSHSHNPVDDEAMQLKKQNRYVCDFCPEEFMYMRCLQAHRTNAHPESASKAVTHRCWKCSRQFAHLNSLRRHFMTHTGERNFLCNVCGKAMSSRDHLKLHINIHTGYKPNVCSTCGKGFVKKSNLKLHERVHSGEKPYVCSHCGKAFSQRSTLVIHER

Uniprot

H9J504 A0A2W1BJD3 A0A2A4J790 A0A212FK79 A0A0N1I2X9 A0A0N1PH32 + More
A0A2H1WWG4 A0A1B6CYS7 A0A0T6BCM2 A0A2H1WUC3 A0A2I2URJ2 A0A096N639 A0A060YDC1

Pubmed

19121390 28756777 22118469 26354079 17975172 24755649 + More

EMBL

BABH01025762 KZ150258 PZC71773.1 NWSH01002922 PCG67292.1 AGBW02008114 + More
OWR54144.1 KQ459444 KPJ00941.1 KQ460077 KPJ17861.1 ODYU01011531 SOQ57327.1 GEDC01018885 GEDC01018557 GEDC01015550 GEDC01005938 GEDC01004527 JAS18413.1 JAS18741.1 JAS21748.1 JAS31360.1 JAS32771.1 LJIG01001985 KRT84955.1 ODYU01011124 SOQ56669.1 AANG04000264 AHZZ02024315 FR907702 CDQ87145.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000053240 UP000011712 + More
UP000028761 UP000193380

PRIDE

H9J504

Pfam

PF07776   zf-AD        + More
PF00096   zf-C2H2
PF01352   KRAB

Interpro

IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf
IPR001909   KRAB
IPR036051   KRAB_dom_sf

SUPFAM

SSF57667 SSF57667 + More
SSF109640 SSF109640

CDD

cd07765 KRAB_A-box

ProteinModelPortal

H9J504 A0A2W1BJD3 A0A2A4J790 A0A212FK79 A0A0N1I2X9 A0A0N1PH32 + More
A0A2H1WWG4 A0A1B6CYS7 A0A0T6BCM2 A0A2H1WUC3 A0A2I2URJ2 A0A096N639 A0A060YDC1

PDB

2I13 E-value=2.62971e-25, Score=287

KEGG

101744112 no KO assigned | (RefSeq) zinc finger protein 484-like

GO

GO:0005634 GO:0003676 GO:0008270 GO:0003700 GO:0006355 GO:0046872 GO:0006096 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Length:

458

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00213

outside

1 - 458

Pi

69.407695

Theta

135.893651

Tajima's D

-0.968187

CLR

146.662085

CSRT

0.143442827858607

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree