Pre Gene Modal
BGIBMGA005723
Annotation
PREDICTED:_uncharacterized_protein_LOC101743028_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear Reliability : 4.104
Sequence
CDS
ATGGAGCAAGTTGTAATAAAGACTGAAGTACAAAACAATGGAGAAATACTATTGTTTTATGTTGATGAAAACGGAGGCACCGAACAAAGTATTCTAACAACAGTTGAGAGTATAGAAAATTCTGGTATAGATTTACAAAATATCAACCCATACGCCACTGAAGTTCATTTTGATGAAACTCATTTTGAAATAAGTCAATCAAACAAATTGACTTTTCCATTAGAAAACTGGACAGATGAAGAAATTCAACGACTTCTTGTCTTCTACAATGATAATAAGCAAGCTTTCGTCACAGGGTCTACAAAGAGAATCCATCTTTGGACTATAGCTTGCAAGACCATGATCTTCAACAAGACTCCGATATCATGTGACCGCAAGCTTAAATTTCTAAAGGATTCCTATGTTCAAGTGTGCCGAACAAGAACTCAGCAAGGAATGTCTATGGAAATCATAGATTTATGTCATCAAGCATTTGGTGATGACCCAGAAATACATTCAATATTAAGTCAAGAAGAAAAGGTTAGGCCACAGCCAACTCGGGTTGAAGATAGTAGTCTAGTTTTAAAAAAGTTGACCACCAACAAACCTGAACAGAAAGTGGAAAAAATGCTACAATTGTATTTAAAATATAAAAAACAGTTTCAACAAGAACATTATACTAGGAGTCTTTGGGACAATATAGCAATGCAATTAGGTGAAGATGATGGAGTTTTTTGGCAGAAACGTTTCATGAATTACAAACAGCACTACATTGGTTTATTAGAGAAGAAAATGCAGGGTATTGTTGAATTCAATTGGCCCTATATGGCATTATATGACAAAATATTTAAAGACGACATTGAATTTCGTAGGAAATATCCATTTTCTGATGATTCAAACACAAGTAATGAAACATTAACACAACATCACAACATTTGGTTTGAAACTGAGAAAGTTGTTTTGATAAAACATCAATATGATTGTTTTGATGATTTTCAAGATCCGAAGATACCAAAAGGCTTTCTGTGGAACGAAATCAGCAGATTGTTGGACAAACCAGCTGATCTATGTAAAAAGAAAGTTCTGGATCTCAAGAAGGAACATTACATAAAATATGAAGATAACTATGACCTATCCAGTCGAAAACCTCTAGAAATACTATTAGACTATGTTATATGTAAAGATATTGAATGTGAAATTAGAAAAACCAAAAACGATTCGGACACATTTGAGATTTACAAGTCAGAAGAGGTCGATGAAATAGTACAATTCATATATGACAATACAGAGATATTCAAAGATCCAATATGTCATTTTGTTTGCTTCGGAGTCATAGCTAAAAACTTGAAAAGGAAAGTGGGTAGTGTTAAAAGAAAATGGCAAGAACTTGTGACTTTGTATAAAATTATTTTGGAAGATAAAAAAGAAAATCCAGATATGCAGATAGATTGGAGGTATATAGAGCTGTTTGATAGGATCTTTGCTTACGGAATGGACACTAAACTGCTGGAGGGTTATGAGAAAACTGATAATAATATAAGCCATGATAAAAAGCAAGCAAGCATAGAAAAAGACACGAACGGAACCGATTATGAATCAAATGATGAGATTAATACAAAAAAATCGAAGCATTTAGGAGAATCAAAAGCATTTAAGATTCTGGGATACTACCTCAAGAACAAGATTAAATTTCAAAAGACGACGAATAAAAACAAGAACACCTTATGGAACGTTCTGGCACCGCGGCTCGGCATTACTGCTACGCAGTGCGCACACAGATTCCGAAATCTAAAACAAGTTTACACAGCATACGTACAAAGGGAAATAAGTAAGCCAGAAATGCCAATAATGTGGCCATATTACACACTTTGCAAGAAAGTATTTGGTTATAGAGCATTGAAAACTAAACTAAAAAATGGCAAAAATAACTCGGACACCGAAGATTGGTCGCCGAAAGAGATAAAATCGCTTATAAATTTCTTTTCGAAGAATTTCCATGACATCACCAATAACATTGATGATGCTAGTCATTGGCGTCCCATTGCTGCAGAAATAGATAAGACTACAAACTCTTGTAAGGATAAATTCTTAGAACTGAGAAAGTCATACAGGAAACTCAAGACCCAAATTTCCAGGAATCCCAATGTGAAAATCTCATGGAAATACTTTAAGATGTTCGAAGATATTTATAATTCGAATCGCGAGGGTGAAATGGAGGTTGATGATAATCATGAAGACGAAGACTACGAATGTATCATAGTCTTACCTGAAGGAGCTGATATATCAGATATTGAAAATTCTCAAATGATGATACAAGAAAACTCTGAAAACGGTGAAAATGCACAAGAAGAAGAAAGCATTGCCCAAGAAGAAGAAAGCATTGCCCAAGAAGAAGAAGACATTGCACAAGAAGAAGAAAACATTGCCCAAGAAGAAGAAAACATTGCCCAAGAAGAAGAAAACATTGCCCAAGAAGAAGAAGAAAACATTATGCAAGAACAAGAAACTACCGAACCTATGGATGTAACTGAACCAATGCAAGAGAACTCTGAAATGATTTCAATAGCCATAGACATTCAAGCTATATTGGATGACACCGATTCACAACCAGCCATACAAGACACGCCTAAAACAATAAAGAAGTGGACGAAGAAGTCCAAGAGGCGTTTGCTAATATTGTACATAAATTATATCCGATCGAACAAAGGAAAAGAGATCAATACTAAAGATATGTGGCGGGATATTGGCAAGAAGCTAGACCGACGTCCAATAATATGCAAGAAAATGCTGGCTAAACTCAAGAATAGATATCTGAAGAACAAGAGTGATAGGACAAAAGATCCTCTCTCTGATCTACTTGAGAAATTAATCAAATTGAAGCCGAAATTTGTAAAGAATAGAGTTTATAACGACGTCTCCATACCGGCTGACAAAGTGACGAAGGCGTTGAACTATTATTTGCAGTACATTGAAGATTTTTCAAATCCGAAATTCGACAAACGCTTCCTATGGACGGAATTGGCCAATCACGTTTCTGAACCCGTCCCGAAGATCATCAGCAAGATAAATTATTTGAAACAGGCATATAATGACGATTATATAACGGAGGAAAACGCGCAGTTCATTGAAATTTTAAAAGAGATAATCGCTAAAGAGATCGCAATTAATTTGGTTACAGAGATAGAAGTGAAAAGTAATTTAGACTATACGGAGAGTCCTTGGTCCGAAACAGATGTAGAACAGCTGTTAGAGTGGTATTTGAGTAATCTTGATAAGTTTAAACACCCGAAATATGTGCGCTCGTATTTGTGGAAGGAGGCTTCGGAAATTATGAAACGTAGTCCACTAGATTGTTCTAGAAAAATGTCTGAAATCCGTTCGCAGTACCGTAGTCTGGTGAAGCAGGATAACCCTGAACTGGCCACTTGGAAGTTCCAAGCTTTGTGCCAGAAAATTTATGGCACAGGAAAGAAAGGCAATAATACTGTGAATAATTTGTAA
Protein
MEQVVIKTEVQNNGEILLFYVDENGGTEQSILTTVESIENSGIDLQNINPYATEVHFDETHFEISQSNKLTFPLENWTDEEIQRLLVFYNDNKQAFVTGSTKRIHLWTIACKTMIFNKTPISCDRKLKFLKDSYVQVCRTRTQQGMSMEIIDLCHQAFGDDPEIHSILSQEEKVRPQPTRVEDSSLVLKKLTTNKPEQKVEKMLQLYLKYKKQFQQEHYTRSLWDNIAMQLGEDDGVFWQKRFMNYKQHYIGLLEKKMQGIVEFNWPYMALYDKIFKDDIEFRRKYPFSDDSNTSNETLTQHHNIWFETEKVVLIKHQYDCFDDFQDPKIPKGFLWNEISRLLDKPADLCKKKVLDLKKEHYIKYEDNYDLSSRKPLEILLDYVICKDIECEIRKTKNDSDTFEIYKSEEVDEIVQFIYDNTEIFKDPICHFVCFGVIAKNLKRKVGSVKRKWQELVTLYKIILEDKKENPDMQIDWRYIELFDRIFAYGMDTKLLEGYEKTDNNISHDKKQASIEKDTNGTDYESNDEINTKKSKHLGESKAFKILGYYLKNKIKFQKTTNKNKNTLWNVLAPRLGITATQCAHRFRNLKQVYTAYVQREISKPEMPIMWPYYTLCKKVFGYRALKTKLKNGKNNSDTEDWSPKEIKSLINFFSKNFHDITNNIDDASHWRPIAAEIDKTTNSCKDKFLELRKSYRKLKTQISRNPNVKISWKYFKMFEDIYNSNREGEMEVDDNHEDEDYECIIVLPEGADISDIENSQMMIQENSENGENAQEEESIAQEEESIAQEEEDIAQEEENIAQEEENIAQEEENIAQEEEENIMQEQETTEPMDVTEPMQENSEMISIAIDIQAILDDTDSQPAIQDTPKTIKKWTKKSKRRLLILYINYIRSNKGKEINTKDMWRDIGKKLDRRPIICKKMLAKLKNRYLKNKSDRTKDPLSDLLEKLIKLKPKFVKNRVYNDVSIPADKVTKALNYYLQYIEDFSNPKFDKRFLWTELANHVSEPVPKIISKINYLKQAYNDDYITEENAQFIEILKEIIAKEIAINLVTEIEVKSNLDYTESPWSETDVEQLLEWYLSNLDKFKHPKYVRSYLWKEASEIMKRSPLDCSRKMSEIRSQYRSLVKQDNPELATWKFQALCQKIYGTGKKGNNTVNNL
Summary
Similarity
Belongs to the ligand-gated ion channel (TC 1.A.9) family.
Uniprot
EMBL
Proteomes
PRIDE
Interpro
IPR017877
Myb-like_dom
+ More
IPR036719 Neuro-gated_channel_TM_sf
IPR006029 Neurotrans-gated_channel_TM
IPR006202 Neur_chan_lig-bd
IPR006028 GABAA/Glycine_rcpt
IPR036734 Neur_chan_lig-bd_sf
IPR006201 Neur_channel
IPR018000 Neurotransmitter_ion_chnl_CS
IPR039353 TF_Adf1
IPR001005 SANT/Myb
IPR006578 MADF-dom
IPR036719 Neuro-gated_channel_TM_sf
IPR006029 Neurotrans-gated_channel_TM
IPR006202 Neur_chan_lig-bd
IPR006028 GABAA/Glycine_rcpt
IPR036734 Neur_chan_lig-bd_sf
IPR006201 Neur_channel
IPR018000 Neurotransmitter_ion_chnl_CS
IPR039353 TF_Adf1
IPR001005 SANT/Myb
IPR006578 MADF-dom
Gene 3D
ProteinModelPortal
Ontologies
Topology
Length:
1159
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00346
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00019
outside
1 - 1159
Population Genetic Test Statistics
Pi
169.715256
Theta
160.16145
Tajima's D
0.130741
CLR
1.561858
CSRT
0.406079696015199
Interpretation
Uncertain
