Silkworm Genome Informatics Database

Gene

KWMTBOMO15767

Pre Gene Modal

BGIBMGA002238

Annotation

PREDICTED:_zinc_finger_protein_629_[Papilio_machaon]

Location

Bomo_Chr26(-):9587592-9588667 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.776

CDS

ATGCTTTCCGTTGAGCAGACTTATTCGAGGCTCTTTAGGCCGTGGGACGTAAGTGATAAAAGTGATGCAACCAAAGAGGAAATTAAAAGTAAAAAGAGAAAAATCGAAGAACAAAAACGACAGAATCGCTTGAGGAAGATCCGTGGAATATACAAGAGAGACATTAATCAAGACGCCACTGTGTCGACGACAACTGCAGATGAAGACGTAAACAAGCCTGTGGATGCTGAGTCGCCAGTGACCAGTTTGAGTTTGTGCTGTGACAGACTGCTTCAGGATCCGCAAAAAATAGAAGTCCGCAAAAAAGAGAGTCCACATTCAGAACCTAGCCCGCTAATCCACACATTATCTGAGTCACCAGGTATATCCGTACATCCGATGATGTACAACCAAATGGTGACACCTGAATACGCCCCTTCAGACATTGCACAGGCATTAGGTATACCACCAACCGATCCTTTACTTCTGGAATCACTAGCCCAAGGCTACGCGATGGAGCTGGAATACGCGAGGATACTCCAACAAGAAAACGAAGCGAAATTAATGAACGCTAGAAAACAACGCCCAAAAAAATACAAATGTCCACATTGTAACGTTGGCTTCTCCAATAATGGTCAGCTGAAGGGTCACATACGAATCCATACAGGAGAAAGACCTTACAAATGCGACGAAAAGAACTGCGGCAAGAGTTTCACCAGAAACGAAGAGTTGACCAGACATAAAAGAATACATTCTGGCGTGAGGCCGTTTCCTTGTGCGACTTGCGGGAAGAAGTTCGGGAGAAGAGATCATTTGAAGAAGCACACGAGGACGCATTTCGTGCAGGCGGAGAGGATGATGCCGGTATTCGTGCCTCTAGCAGCCATGCCTCATGTCGCAGCGTACCCATATCTATATGGTTACTGA

Protein

MLSVEQTYSRLFRPWDVSDKSDATKEEIKSKKRKIEEQKRQNRLRKIRGIYKRDINQDATVSTTTADEDVNKPVDAESPVTSLSLCCDRLLQDPQKIEVRKKESPHSEPSPLIHTLSESPGISVHPMMYNQMVTPEYAPSDIAQALGIPPTDPLLLESLAQGYAMELEYARILQQENEAKLMNARKQRPKKYKCPHCNVGFSNNGQLKGHIRIHTGERPYKCDEKNCGKSFTRNEELTRHKRIHSGVRPFPCATCGKKFGRRDHLKKHTRTHFVQAERMMPVFVPLAAMPHVAAYPYLYGY

Uniprot

H9IYA5 A0A212EPD5 A0A0N0PAZ3 A0A194QDV5 A0A2H1WL67 Q16HJ2 + More
A0A182Y8Q8 A0A182GV90 A0A182GG76 A0A1S4G0T0 B0WL43 W5J1S3 A0A182J201 A0A182PHV8 A0A084VB83 A0A182XIG8 A0A195FFR1

Pubmed

19121390 22118469 26354079 17510324 25244985 26483478 + More
20920257 23761445 24438588

EMBL

BABH01020881 AGBW02013496 OWR43334.1 KQ461111 KPJ08938.1 KQ459144 + More
KPJ03604.1 ODYU01009325 SOQ53662.1 CH478164 EAT33721.1 JXUM01090629 KQ563853 KXJ73165.1 JXUM01011392 KQ560329 KXJ83012.1 DS231979 EDS30206.1 ADMH02002159 ETN58192.1 ATLV01006062 KE524335 KFB35227.1 KQ981606 KYN39540.1

Proteomes

UP000005204 UP000007151 UP000053240 UP000053268 UP000008820 UP000076408 + More
UP000069940 UP000249989 UP000002320 UP000000673 UP000075880 UP000075885 UP000030765 UP000076407 UP000078541

PRIDE

H9IYA5

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IYA5 A0A212EPD5 A0A0N0PAZ3 A0A194QDV5 A0A2H1WL67 Q16HJ2 + More
A0A182Y8Q8 A0A182GV90 A0A182GG76 A0A1S4G0T0 B0WL43 W5J1S3 A0A182J201 A0A182PHV8 A0A084VB83 A0A182XIG8 A0A195FFR1

PDB

2PRT E-value=1.68483e-19, Score=235

KEGG

101735539 K12379 huckebein | (RefSeq) zinc finger protein 184

PATHWAY

04013 MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0003676 GO:0016021 GO:0046872 GO:0006468 GO:0008270 GO:0005215 GO:0006270 GO:0042555 GO:0003707 GO:0006281 GO:0006259

Length:

301

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.85291

Exp number, first 60 AAs:

0

Total prob of N-in:

0.15161

outside

1 - 301

Pi

262.553913

Theta

216.499817

Tajima's D

1.011779

CLR

0.010929

CSRT

0.662966851657417

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics