Gene

KWMTBOMO15655

Pre Gene Modal

BGIBMGA010685

Annotation

PREDICTED:_snRNA-activating_protein_complex_subunit_4_[Bombyx_mori]

Location

Bomo_Chr26(-):5339326-5341816      View in EpiBrowser

Transcription factor

MYB

Location in the cell

Nuclear   Reliability : 4.638

CDS

ATGTTACAAGATAGCGATGAAGACGATTTGAATGACTTAAATCAACTCAATGCAGTTTTAGAAGCTGACAAGCAAATAATCAATGAAGAAACGGTATCAGATTCCTGCTCAACAACCACCAATGCAGCATTGCACAGTAAAGTATCTGAAGAATTATCTTTGATAGATACAGCACTGACTCTCAATAAACTCACTGATGAAAAGTTAAGAAAACTTGAGAACCTACTGATTGAACGATTGCAAGATTGTAAAAAAAAAAAACTTGCAGATTTAAGAGATGTCAGACCTACCAATTACCGGCAGGCTTGTTTTCGCTATCACTACTGTGCAAAGCCTTATTTTAAAGATAAATATAACTTTGCGGCACCTAGCAATGAGGATACAATCCTTATGCTGCAATCAAACATGTTTGACTTTTCACAAATCGTCGCAGTAACCGGCTGGACCCTCCGAGACAAAAGTCAATTTCTTGCTGAACTTCATAAAATGTCTCAGACGATCAGAAAAAATGAACTTCATGAAAAAATTAGTGTTCTACGTAGAGCAAGAAAAACAAAAGATAAGAAGGAAATTGATAAAGAAATTGCAAAACTCAGCAAGGAGCTATATGATGTTAAGAAGAAACCACTTTCAGAATTGGCTCTAGACATAGATGAGGATTATGATTGGGATGTTCTAGCCAACAAGTTGAACCGTAGACATACAGCACAAGAATACCAGGCACTGTGGAAGCTATTCTTTCATCCCAGCATTAACAAGAAGACATGGACTAAAGCTGAACATTTATCTCTACAGAGTATCTCCAGTGCTCATAAGTTCCAGGATTGGGATACAATTGCCAAAGAACTCAATACTGGGAGAACAGGCTACCAGTGTTTTGTTTATTTTAGAACAAATATGGTAAATTCATTCAATGGAAGAAAATGGACTGAGGAAGAAGAAGAGTACTTAAGAAGATTGATTGACTATTACAGAGAAGACACTTATATTCCATGGGGCAGAGTTGCAGCAGCAATGGAAAATAGAACCAAAATACAAATATATAACAAATATACAAGGCTTGTTGGTAATAGAAAAGGTAGATTTTTGCCTGAAGAAGATGCAGTCATTTTAAATTATGCAAACAAGTTTGGAACAAATTTTCGGAAAATGTTGACATACTTGCCGGGACGTTCCATGGTTCAAATTAGAAACCGCTATCGTGTACTAAGTAAAAGATGTACCTCCACAGTGTGGACAGAAGAAGAAGATAAAATGCTCATACAGCTCATGGCAAACCAAGATGGAAATGTAAATTTTTCAAGTGTATCTACTCATTTTCCGGGAAAAGACAGGGAAAATCTTAGAAGTAGATACATTACATTATTAAAATGGATGAGAAAGCACCCTAATGTTGATATTAAACATGCTCCACGTAGAGGAGCAAGACGTCTCACTCATGGTGAAGCATCAGCTGATTTAAACAAAGCACTTGAGGATTTAAAAAATCGCATGGAAAATGAAGTTAAAACAAAAAAAAGCAAAAGGATGACAAGAGAATCATCAGAAAGAGATATAGAAAAAGCTATAATTGCAAGTCTTGTCAATGAATTACTAGTGGAAAGAGACATGAAACTTACCGAACAATATGAGAAAGATTTGGACATAATTGATGTTGATGAAAGACCACCATCTCTGAATACACCATCAGATATACCAGCATATCATGTTCCATACAAAATCAGATCCAAAAATCGTGACAATGAGATTAATAAAATAAATGAAATAGATTTGAAAGATAAATTCTTAAAAGATGATGTGACAATCAAAGAACAGTTTACAGAATGCGGACTGATGGAAATTGATGATGAGTGA

Protein

MLQDSDEDDLNDLNQLNAVLEADKQIINEETVSDSCSTTTNAALHSKVSEELSLIDTALTLNKLTDEKLRKLENLLIERLQDCKKKKLADLRDVRPTNYRQACFRYHYCAKPYFKDKYNFAAPSNEDTILMLQSNMFDFSQIVAVTGWTLRDKSQFLAELHKMSQTIRKNELHEKISVLRRARKTKDKKEIDKEIAKLSKELYDVKKKPLSELALDIDEDYDWDVLANKLNRRHTAQEYQALWKLFFHPSINKKTWTKAEHLSLQSISSAHKFQDWDTIAKELNTGRTGYQCFVYFRTNMVNSFNGRKWTEEEEEYLRRLIDYYREDTYIPWGRVAAAMENRTKIQIYNKYTRLVGNRKGRFLPEEDAVILNYANKFGTNFRKMLTYLPGRSMVQIRNRYRVLSKRCTSTVWTEEEDKMLIQLMANQDGNVNFSSVSTHFPGKDRENLRSRYITLLKWMRKHPNVDIKHAPRRGARRLTHGEASADLNKALEDLKNRMENEVKTKKSKRMTRESSERDIEKAIIASLVNELLVERDMKLTEQYEKDLDIIDVDERPPSLNTPSDIPAYHVPYKIRSKNRDNEINKINEIDLKDKFLKDDVTIKEQFTECGLMEIDDE

Uniprot

H9JMD2   A0A2A4J723   A0A2W1BLN6   A0A2H1VUD6   A0A1E1W3P2   A0A0N1IQ64   + More
A0A194QE06   A0A0V0GD81   A0A1B6LEB7   A0A1B6IBV8   A0A1B6IHL9   A0A336KTS2   A0A336MBR4   A0A182Q1D2   A0A0J7K7T8   A0A182VGB2   A0A182UHT4   A0A182L8C7   A7UVR7   A0A182XP08   A0A182HK50   A0A084W0I8   A0A182RFZ0   A0A182NQY4   A0A182PR89   A0A182YND6   A0A182SKB4   A0A0T6B7I8   A0A182VW66   A0A0C9RB02   A0A226NIF9   A0A182JMX5   A0A182M6K5   W5JA82   A0A182JT93   A0A0P6IT43   Q17D11   A0A0K2UHR3   A0A182GKV6   A0A182FS91   A0A1L1S0G0   A0A1S4G7N6   A0A1Q3G106  

Pubmed

19121390    28756777    26354079    20966253    12364791    14747013    + More
17210077    24438588    25244985    20920257    23761445    26999592    17510324    26483478    15592404   

EMBL

BABH01040067    BABH01040068    NWSH01002958    PCG67222.1    KZ150086    PZC73766.1    + More
ODYU01004216    SOQ43854.1    GDQN01009447    JAT81607.1    KQ459941    KPJ19168.1    KQ459193    KPJ03180.1    GECL01000775    JAP05349.1    GEBQ01017932    JAT22045.1    GECU01023280    JAS84426.1    GECU01021287    JAS86419.1    UFQS01000490    UFQT01000490    SSX04360.1    SSX24724.1    UFQT01000662    SSX26253.1    AXCN02001485    LBMM01012360    KMQ86261.1    AAAB01008987    EDO63291.2    APCN01000816    ATLV01019122    KE525262    KFB43732.1    LJIG01009328    KRT83299.1    GBYB01010282    JAG80049.1    MCFN01000044    OXB67118.1    AXCM01000964    ADMH02002066    ETN59679.1    GDUN01000959    JAN94960.1    CH477301    EAT44248.1    HACA01020111    CDW37472.1    JXUM01070721    KQ562623    KXJ75468.1    AADN05000150    GFDL01001573    JAV33472.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000075886    UP000036403    + More
UP000075903    UP000075902    UP000075882    UP000007062    UP000076407    UP000075840    UP000030765    UP000075900    UP000075884    UP000075885    UP000076408    UP000075901    UP000075920    UP000198323    UP000075880    UP000075883    UP000000673    UP000075881    UP000008820    UP000069940    UP000249989    UP000069272    UP000000539   

PRIDE

H9JMD2   

Pfam

PF00249   Myb_DNA-binding

Interpro

IPR001005   SANT/Myb        + More
IPR017877   Myb-like_dom       
IPR009057   Homeobox-like_sf       
IPR017930   Myb_dom       

SUPFAM

SSF46689   SSF46689       

CDD

cd00167  SANT

ProteinModelPortal

H9JMD2   A0A2A4J723   A0A2W1BLN6   A0A2H1VUD6   A0A1E1W3P2   A0A0N1IQ64   + More
A0A194QE06   A0A0V0GD81   A0A1B6LEB7   A0A1B6IBV8   A0A1B6IHL9   A0A336KTS2   A0A336MBR4   A0A182Q1D2   A0A0J7K7T8   A0A182VGB2   A0A182UHT4   A0A182L8C7   A7UVR7   A0A182XP08   A0A182HK50   A0A084W0I8   A0A182RFZ0   A0A182NQY4   A0A182PR89   A0A182YND6   A0A182SKB4   A0A0T6B7I8   A0A182VW66   A0A0C9RB02   A0A226NIF9   A0A182JMX5   A0A182M6K5   W5JA82   A0A182JT93   A0A0P6IT43   Q17D11   A0A0K2UHR3   A0A182GKV6   A0A182FS91   A0A1L1S0G0   A0A1S4G7N6   A0A1Q3G106  

PDB

1H89     E-value=7.14133e-07,     Score=129

KEGG

105841785    K09453 snRNA-activating protein complex subunit 4 | (RefSeq) snRNA-activating protein complex subuni

GO

GO:0003677   GO:0019185   GO:0009301   GO:0042795   GO:0042796   GO:0005634   GO:0008270   GO:0003676   GO:0051287   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

Length:

617

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00134

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00031

outside

1  -  617

 

 

Pi

187.194797

Theta

190.569881

Tajima's D

-0.237797

CLR

49.199107

CSRT

0.304934753262337

Interpretation

Uncertain