SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15606
Pre Gene Modal
BGIBMGA010718
Annotation
PREDICTED:_RB-associated_KRAB_zinc_finger_protein_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.604
 

Sequence

CDS
ATGACTCTAGATTCTGAGGTAGCCAGCAGCGATTCAAAAAGTTCAGCAGACGAGGAAGACTTACACAATTTTAATGAACATAGCCAAACATATAGAAAGATTCAGCCAAAGCTCCAGGTTTGGGAAAACGACTGTAATGACAAATTTTCTGGTGATGAATCAACATCTCGTAATGGCGATTTCCAAATCGAAGACGAATTGGAAAGCTCTGGTCACCTGAGAAGAGTACATCAAAGAGGGCCAAATGAGGAAAAAATAGACCAAGCGAATTTAATTAACGTTAACAAAGATTCATTTGAAAACTGTCCAATATGTGAAAAATTGGTGCACAAATCAAAGTACAAAGAACATCTGGCTGATCACGGTAAGCCTCCAAAGAAATATGTATGTGAATATTGTGCAAAAGAATTTAGATATCAATCAGCCTTTAAAACACATCAGTTGACTCACACAGATGAGTTTAAATACCAGTGTCAGTTTTGCCCATACAAAGCTCAATATTTAGGACTCATTAAAGTGCATGTTAGGACTCATACTGGAGATTATAACTATAAATGTCCACATTGCCCATCAAAATTCATAACAAAGAGTAATCTCAACCAGCATATCCAAAGGCATAATGTTCGTGGGAATATTAAATGTCATACATGCAATAAATATTTCTATCGTAAAAGTAATATGGAAAAACATTACTCAACAAAACATTTGGGCGTACGTGATGTAATCTGTGATATGTGCGGTACAGGCTTTAGCCACAGAGATGAAATGCTAAGTCATCAACTTAGAATGCACAACAGGGAGAGGTTACTTCGTCGGGTTCCGACCTATCTGAGAGTAGCTAGAGAAAAGGAAAAAGATGAAATTGACATTAAACAACAGCAGTTGCAAAAATTATGA
Protein
MTLDSEVASSDSKSSADEEDLHNFNEHSQTYRKIQPKLQVWENDCNDKFSGDESTSRNGDFQIEDELESSGHLRRVHQRGPNEEKIDQANLINVNKDSFENCPICEKLVHKSKYKEHLADHGKPPKKYVCEYCAKEFRYQSAFKTHQLTHTDEFKYQCQFCPYKAQYLGLIKVHVRTHTGDYNYKCPHCPSKFITKSNLNQHIQRHNVRGNIKCHTCNKYFYRKSNMEKHYSTKHLGVRDVICDMCGTGFSHRDEMLSHQLRMHNRERLLRRVPTYLRVAREKEKDEIDIKQQQLQKL

Summary

Pfam
PF00096   zf-C2H2        + More
PF07776   zf-AD
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR012934   Znf_AD       
SUPFAM
SSF57667   SSF57667       
PDB
2I13     E-value=1.3033e-16,     Score=210

Ontologies

Topology

Length:
298
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01892
outside
1  -  298
 
 

Population Genetic Test Statistics

Pi
220.182712
Theta
205.605494
Tajima's D
-0.21951
CLR
0.573487
CSRT
0.302234888255587
Interpretation
Uncertain
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