Gene

KWMTBOMO15203

Pre Gene Modal

BGIBMGA004948

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF26.1-like_[Papilio_machaon]

Location

Bomo_Chr25(+):6669829-6672499      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.067

CDS

ATGGACATTGATTTTAATCACATAGAAAGAGATCTGCTAGACGATACTACAGATTCGTCAGTAAAACTGGAATTTAAAGAAGAAGACGACGATGAGCGATATACTATGGATCTTCTTCGGCTTGCAACTTGTGTAGAATCAAATACAGATCCAATTGAATTCAACTCCACCGATGCAATAACGGATCCCAAAACTGGAAAAATGGTTTGCCTTCATTGCTTAGGTGAAATTGATTCAAGTTCCATTAATGCTCACATGGTTAATGTTCACAATTATAGAAAAATTCTTTTCAAATGTCACATCTGTCAGACAGTTTTTCAAGAACGCAAACTTTTACAAGTCCATAGAGAAGAATGTCGTCCTCTGCTAAAAACTACTAAGAAAAAATCAATGGGACAAATAATGAAAGAAGTGGACAAGATATTAAAGAATCCTGAAAATCTATTAGATACTGTAGCTTGTCCGGTTTGTGTTGTGGAAGTGCCAAAATTTTCACTGCGGGAACATGTGGATATAGAACATAGGAAGCCTGAAATTAATTTAACATGTCAGATTTGTAACAGAACCTTCAAGTCAAAGCTTACTCTAAAAGAGCATATTAAATTAGTGCATGAAGCTGTTGAAGATTCTGAGCAGTGTGAACTCTGCGGGCAAAAGTTTAGATCTCTTAAATATTTAGCCAACCATAAAAGAAATGTGCACCCGAGTGGTGACAAAATTCACAAGTGTACTGTTTGTGGCAAAGAGTTTAAAAGTCGTCTTTGTGTTCACCAACATATGAAGCATGTTCACCCTCCAGAGAGTGCAACTGTAGTATGTCCTCACTGCCCTAACAAGATTTTTAAATCAAGCATTAATTTACATCAACACTTAAAAGTGGCACATGGGATGAAGAAGAAGACTAAAATATAA

Protein

MDIDFNHIERDLLDDTTDSSVKLEFKEEDDDERYTMDLLRLATCVESNTDPIEFNSTDAITDPKTGKMVCLHCLGEIDSSSINAHMVNVHNYRKILFKCHICQTVFQERKLLQVHREECRPLLKTTKKKSMGQIMKEVDKILKNPENLLDTVACPVCVVEVPKFSLREHVDIEHRKPEINLTCQICNRTFKSKLTLKEHIKLVHEAVEDSEQCELCGQKFRSLKYLANHKRNVHPSGDKIHKCTVCGKEFKSRLCVHQHMKHVHPPESATVVCPHCPNKIFKSSINLHQHLKVAHGMKKKTKI

Uniprot

H9J607   A0A2A4K525   A0A2H1V5G6   A0A2W1BCP9   A0A0N1IF46   A0A0L7KT57   + More
A0A1E1WE58   A0A1E1WRH0   A0A194Q237   A0A212F175   A0A336KCP9   A0A0N0PDL0   A0A1I8MN28   A0A0N1I5U8   A0A2A4IS91   A0A1E1W836   A0A2A4K638   H9IWT7   W8C777   A0A226D3L4   A0A336LZZ2   A0A2J7QPR9   Q7Q7E8   A0A1A9W948   A0A1A9XXT3   A0A1B0G8E0   A0A1A9Z5V3   A0A1B0APR0   A0A1A9VBM0   A0A1I8N118   A0A2H1VAW2   A0A0A1WKD9   A0A194Q537   A0A2H1VXV6   A0A0K8UTR1   A0A034WIN2   A0A182KW22   A0A1I8NKQ6   A0A3B4UKS4   B0WXW2   A0A067RJQ1   A0A182INK9   A0A0N1PI81   A0A336LGE0   A0A0X3PMA4   A0A1B0CE69   A0A0X3NKL8   A0A0M4E6G0   A0A336LXQ9   A0A336MZP8   B7PQD8   A0A2P8ZD85   B0WXW6   A0A0X3QHA5   A0A1B6M154   A0A2I3MMN7   A0A0L7LA05   A0A084WNE2   A0A0A9W4I0   A0A146LKQ8   A0A194PVD0   A0A0N1ICW2   B0W9K1   U4UK50   A0A1S4G765   Q16M04   F7GPH1   A0A194RMS6   A0A3B5R6C5   A0A0V0J7U5   A0A0S7G5E1   V9IEB0   B4IH51   B4KSX4   A0A182Y0W0  

Pubmed

19121390    28756777    26354079    26227816    22118469    25315136    + More
24495485    12364791    25830018    25348373    20966253    24845553    29403074    24438588    25401762    26823975    23537049    17510324    17431167    23542700    17994087    25244985   

EMBL

BABH01029888    NWSH01000138    PCG79169.1    ODYU01000772    SOQ36068.1    KZ150211    + More
PZC72191.1    KQ460400    KPJ14984.1    JTDY01005931    KOB66468.1    GDQN01005815    JAT85239.1    GDQN01001547    JAT89507.1    KQ459564    KPI99632.1    AGBW02010936    OWR47495.1    UFQS01000265    UFQT01000265    SSX02217.1    SSX22594.1    KQ460140    KPJ17510.1    KQ458725    KPJ05383.1    NWSH01008233    PCG62645.1    GDQN01007906    JAT83148.1    NWSH01000089    PCG79701.1    BABH01020955    GAMC01003794    JAC02762.1    LNIX01000037    OXA39773.1    SSX22601.1    NEVH01012087    PNF30587.1    AAAB01008960    EAA11034.4    CCAG010000247    JXJN01001542    ODYU01001576    SOQ37990.1    GBXI01015141    JAC99150.1    KQ459463    KPJ00474.1    ODYU01005123    SOQ45677.1    GDHF01022411    JAI29903.1    GAKP01004775    JAC54177.1    DS232174    EDS36772.1    KK852639    KDR19635.1    KQ459920    KPJ19319.1    UFQS01003641    UFQT01000280    UFQT01003641    SSX15817.1    SSX22727.1    GEEE01010202    JAP53023.1    AJWK01008637    GEEE01022724    JAP40501.1    CP012524    ALC42066.1    SSX22725.1    SSX15819.1    SSX35165.1    ABJB010755262    DS764242    EEC08810.1    PYGN01000092    PSN54465.1    EDS36776.1    GEEE01004099    JAP59126.1    GEBQ01010308    JAT29669.1    AHZZ02014832    JTDY01002011    KOB72333.1    ATLV01024593    KE525352    KFB51736.1    GBHO01041283    GBHO01041282    JAG02321.1    JAG02322.1    GDHC01011292    JAQ07337.1    KQ459591    KPI96948.1    KQ458486    KPJ05870.1    DS231864    EDS40226.1    KB632230    ERL90365.1    CH477885    EAT35360.1    JSUE03022244    KQ459989    KPJ18724.1    GEEE01002053    JAP61172.1    GBYX01457318    JAO24229.1    JR041353    AEY59420.1    CH480838    EDW49227.1    CH933808    EDW08471.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000037510    UP000053268    UP000007151    + More
UP000095301    UP000198287    UP000235965    UP000007062    UP000091820    UP000092443    UP000092444    UP000092445    UP000092460    UP000078200    UP000075882    UP000261420    UP000002320    UP000027135    UP000075880    UP000092461    UP000092553    UP000001555    UP000245037    UP000028761    UP000030765    UP000030742    UP000008820    UP000006718    UP000002852    UP000001292    UP000009192    UP000076408   

PRIDE

H9J607    H9IWT7   

Pfam

PF00096   zf-C2H2        + More
PF05605   zf-Di19
PF00849   PseudoU_synth_2
PF07776   zf-AD
PF00163   Ribosomal_S4
PF01352   KRAB

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR008598   Di19_Zn_binding_dom       
IPR006145   PsdUridine_synth_RsuA/RluA       
IPR020103   PsdUridine_synth_cat_dom_sf       
IPR012934   Znf_AD       
IPR006642   Znf_Rad18_put       
IPR032675   LRR_dom_sf       
IPR006612   THAP_Znf       
IPR001912   Ribosomal_S4/S9_N       
IPR039970   TF_Grauzone       
IPR036051   KRAB_dom_sf       
IPR001909   KRAB       
IPR001965   Znf_PHD       
IPR011017   TRASH_dom       

SUPFAM

SSF57667   SSF57667        + More
SSF55120   SSF55120       
SSF109640   SSF109640       

Gene 3D

3.80.10.10    

CDD

cd02869  PseudoU_synth_RluCD_like
cd07765  KRAB_A-box

ProteinModelPortal

H9J607   A0A2A4K525   A0A2H1V5G6   A0A2W1BCP9   A0A0N1IF46   A0A0L7KT57   + More
A0A1E1WE58   A0A1E1WRH0   A0A194Q237   A0A212F175   A0A336KCP9   A0A0N0PDL0   A0A1I8MN28   A0A0N1I5U8   A0A2A4IS91   A0A1E1W836   A0A2A4K638   H9IWT7   W8C777   A0A226D3L4   A0A336LZZ2   A0A2J7QPR9   Q7Q7E8   A0A1A9W948   A0A1A9XXT3   A0A1B0G8E0   A0A1A9Z5V3   A0A1B0APR0   A0A1A9VBM0   A0A1I8N118   A0A2H1VAW2   A0A0A1WKD9   A0A194Q537   A0A2H1VXV6   A0A0K8UTR1   A0A034WIN2   A0A182KW22   A0A1I8NKQ6   A0A3B4UKS4   B0WXW2   A0A067RJQ1   A0A182INK9   A0A0N1PI81   A0A336LGE0   A0A0X3PMA4   A0A1B0CE69   A0A0X3NKL8   A0A0M4E6G0   A0A336LXQ9   A0A336MZP8   B7PQD8   A0A2P8ZD85   B0WXW6   A0A0X3QHA5   A0A1B6M154   A0A2I3MMN7   A0A0L7LA05   A0A084WNE2   A0A0A9W4I0   A0A146LKQ8   A0A194PVD0   A0A0N1ICW2   B0W9K1   U4UK50   A0A1S4G765   Q16M04   F7GPH1   A0A194RMS6   A0A3B5R6C5   A0A0V0J7U5   A0A0S7G5E1   V9IEB0   B4IH51   B4KSX4   A0A182Y0W0  

PDB

2YT9     E-value=0.000142299,     Score=106

KEGG

101743776    K22534 PR domain zinc finger protein 5 | (RefSeq) PR domain zinc finger protein 5-like

GO

GO:0003676   GO:0003723   GO:0009982   GO:0001522   GO:0005634   GO:0008270   GO:0006281   GO:0003700   GO:0003677   GO:0006355   GO:0019843   GO:0046872   GO:0006357   GO:0016573   GO:0006391   GO:0031167   GO:0008408   GO:0005112   GO:0015930  

PANTHER

PTHR23225  

Length:

303

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00041

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07921

outside

1  -  303

 

 

Pi

270.656471

Theta

213.827516

Tajima's D

0.836768

CLR

22.532709

CSRT

0.609519524023799

Interpretation

Uncertain