Gene

KWMTBOMO15132

Pre Gene Modal

BGIBMGA004915

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):5620015-5632289      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.824

CDS

ATGTGTAAAAAGTCCTGTGATGAGGACAAGTGGGAGAGTCACGTAGAAATCTGTCGTATCAGTTCTAATATTAAGCAACAATATTGCTGTAAAGAATGTGGCAAGAAGTTTAAGTTCAAAAAGAGCTATCTTCAGCACATAGAATTGAATCACTCCACATTACCTAATAGTGTTGCTTGCACAAAAAGTAAAATATGGTGTCCAAATGAAACTGTTCTGAAGGAACACATAGAGACAATACACAAAAGAGCTTCGTATGTATGCCCAGAATGCAACAAAGAATTTGTAAGACGTTCTCATGTAACTCGTCATATGACACAGAGTGGCTGTAATGGTCATCAGTTAAATTTGTATCCTTGTGAAATTTGCAACTCAAAATTCACAAGGAAAGATAATTTGATCGTACATCTCAGAACTCAACACATACATAAAAGTGATAAATACTTTTTTTGCAAGTCATGTACTTTTGAAACTAAAAACTTTTCTAGACTTGTAAATCATTGGCTTTTAAAACATTCAGGTACACCAAATTATTATGAATGCTATCATTGCGGTAAATCTACTGGTTCCCGAACAGCAATGGCCAAGCATTTAGAAATACACGGAGAAAAAAGCTACACCTGTGAAGTGTGCGGCTATGCTACATACACGGTAGAAGTAATGCGGCGTCACATCTTAACTCACGTTACGGATAAACCTTACAAATGCGAGCATTGTAACAGATCGTACATAAAGAAATCACAGCTCCAGCGACATTTAGACAATCATGATATGCAGAAAATGTGCCTTAAATGTGGAGAAACTTTCTCTACAACATGCCAATTGTTAGACCACAAAAACGTACACAAAGGAAATAGCAAATTCGCTTGTCATTACCAAGATTGCCGTTTCTCTAAGAAACCATTTTTAAGTGAGGCTCAATTGCAGAAACACGTAAAAGTTCACCTCGAAGATAGACCATACGAGTGCGAAGTGTGCGGCAAGCGGTTCGCGGTGGAGCTGCACATGCGGCGGCACCTGTCCACGCACACACTGGAGCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGAGGCGAGAAGCTCGTAAAGCACGTGCGCGTGCACCACCCCGCCGTGTTCGGCGCGCACCTCAAGCACGTGCGTGCGGTCCTCGGTATCGAAGCGAATACGGTGAGAGTGAAGAAGTCGGAACTAGAGTGTATATTGAACATGTTGGACGCGGAGTCGGATCGGATCATGGACGGCTACGGGGGGACCGGCGTGTTGTACGGCGGCATGCAGGAACAAAAAGATGTCAACGAAAACAGTGACGAAAACATCTCTACGCAAAACGATAATGGACCTTTGATGACAGAAGAGGAGCTTTTGGACAACTTAGGGAAAATGCTGTTCAAACTGATTGATTCAGACACACTCGAGTGTTTCGGTTGGCCCGACGAGCCAGTTGATGTGGTGTTAGAGAAAGTGATCGAGCACTGCGGAGCTAAACCAGCGGATCGCACGATGTGGACGCGCATGCAACGCCTCCGAGAGAACACGAAGCATCTCTTCCTGTACGTGATAGACGACAAGAACATCGCCCGCATGCTGGACACGCACACCATAGACCAGATCGTCAAACATATACTCGCCCAAGTCAGCGACACCGACAAATGA

Protein

MCKKSCDEDKWESHVEICRISSNIKQQYCCKECGKKFKFKKSYLQHIELNHSTLPNSVACTKSKIWCPNETVLKEHIETIHKRASYVCPECNKEFVRRSHVTRHMTQSGCNGHQLNLYPCEICNSKFTRKDNLIVHLRTQHIHKSDKYFFCKSCTFETKNFSRLVNHWLLKHSGTPNYYECYHCGKSTGSRTAMAKHLEIHGEKSYTCEVCGYATYTVEVMRRHILTHVTDKPYKCEHCNRSYIKKSQLQRHLDNHDMQKMCLKCGETFSTTCQLLDHKNVHKGNSKFACHYQDCRFSKKPFLSEAQLQKHVKVHLEDRPYECEVCGKRFAVELHMRRHLSTHTLERPRRCMYCVSARAYVRGEKLVKHVRVHHPAVFGAHLKHVRAVLGIEANTVRVKKSELECILNMLDAESDRIMDGYGGTGVLYGGMQEQKDVNENSDENISTQNDNGPLMTEEELLDNLGKMLFKLIDSDTLECFGWPDEPVDVVLEKVIEHCGAKPADRTMWTRMQRLRENTKHLFLYVIDDKNIARMLDTHTIDQIVKHILAQVSDTDK

Uniprot

A0A3S2M3F7   A0A212ETW2   A0A1E1WSR9   A0A1Z2RRK4   A0A2A4J228   A0A194RL13   + More
A0A194PFU9   A0A1Y1LAK7   A0A2R7WTH6   A0A2J7R1K9   A0A067R6F8   A0A2S2NPB1   D6WQI5   U4U5I4   A0A1B6E3W8   J9K9X6   T1JG23   A0A0M8ZST6   A0A023F2W5   A0A1L8DIW0   A0A023F2E3   A0A154PH90   A0A195EH84   A0A224X9C5   A0A069DWF7   A0A151WRK3   A0A195AWD9   E0VUG3   A0A195FDR5   A0A2A3EQ55   A0A087ZZQ7   A0A195BY37   A0A158NHW9   E2AV88   A0A0A9XCE0   A0A0A9XMQ0   A0A146LDP0   A0A0K8SR27   A0A0A9YAA1   E9JB51   T1I0X7   A0A147BRV8   A0A131XTJ0   A0A1J1HLK0   A0A336MUV5  

Pubmed

22118469    28605547    26354079    28004739    24845553    18362917    + More
19820115    23537049    25474469    26334808    20566863    21347285    20798317    25401762    26823975    21282665    29652888   

EMBL

RSAL01000053    RVE50072.1    AGBW02012531    OWR44891.1    GDQN01001040    JAT90014.1    + More
KY938831    KY963168    ASA46472.1    ASA46488.1    NWSH01003479    PCG66217.1    KQ460045    KPJ18232.1    KQ459604    KPI92261.1    GEZM01062258    GEZM01062257    JAV69918.1    KK855503    PTY22859.1    NEVH01008206    PNF34720.1    KK852669    KDR18870.1    GGMR01006396    MBY19015.1    KQ971354    EFA06069.1    KB631982    ERL87603.1    GEDC01004678    JAS32620.1    ABLF02040311    JH432192    KQ435863    KOX70410.1    GBBI01003027    JAC15685.1    GFDF01007810    JAV06274.1    GBBI01003257    JAC15455.1    KQ434905    KZC11225.1    KQ978957    KYN27232.1    GFTR01007501    JAW08925.1    GBGD01000862    JAC88027.1    KQ982813    KYQ50305.1    KQ976725    KYM76563.1    DS235786    EEB17019.1    KQ981636    KYN38805.1    KZ288194    PBC33895.1    KQ978501    KYM93574.1    ADTU01016095    GL443059    EFN62642.1    GBHO01025207    JAG18397.1    GBHO01025209    JAG18395.1    GDHC01013482    JAQ05147.1    GBRD01010584    JAG55240.1    GBHO01015063    GBRD01010586    JAG28541.1    JAG55238.1    GL770938    EFZ09943.1    ACPB03015537    GEGO01001943    JAR93461.1    GEFM01006271    JAP69525.1    CVRI01000010    CRK88909.1    UFQT01002773    SSX34046.1   

Proteomes

UP000283053    UP000007151    UP000218220    UP000053240    UP000053268    UP000235965    + More
UP000027135    UP000007266    UP000030742    UP000007819    UP000053105    UP000076502    UP000078492    UP000075809    UP000078540    UP000009046    UP000078541    UP000242457    UP000005203    UP000078542    UP000005205    UP000000311    UP000015103    UP000183832   

Pfam

PF00096   zf-C2H2        + More
PF16622   zf-C2H2_11
PF12235   FXMRP1_C_core
PF00013   KH_1
PF17904   KH_9
PF05641   Agenet
PF18336   Tudor_FRX1

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR041697   Znf-C2H2_11       
IPR004087   KH_dom       
IPR022034   FXMRP1_C_core       
IPR016197   Chromo-like_dom_sf       
IPR041560   Tudor_FRX1       
IPR040148   FMR1       
IPR040472   FMRP_KH0       
IPR004088   KH_dom_type_1       
IPR008395   Agenet-like_dom       
IPR036612   KH_dom_type_1_sf       
IPR019787   Znf_PHD-finger       
IPR001965   Znf_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR011011   Znf_FYVE_PHD       
IPR019786   Zinc_finger_PHD-type_CS       

SUPFAM

SSF57667   SSF57667        + More
SSF54791   SSF54791       
SSF54160   SSF54160       
SSF57903   SSF57903       

Gene 3D

3.30.1370.10     3.30.40.10    

ProteinModelPortal

A0A3S2M3F7   A0A212ETW2   A0A1E1WSR9   A0A1Z2RRK4   A0A2A4J228   A0A194RL13   + More
A0A194PFU9   A0A1Y1LAK7   A0A2R7WTH6   A0A2J7R1K9   A0A067R6F8   A0A2S2NPB1   D6WQI5   U4U5I4   A0A1B6E3W8   J9K9X6   T1JG23   A0A0M8ZST6   A0A023F2W5   A0A1L8DIW0   A0A023F2E3   A0A154PH90   A0A195EH84   A0A224X9C5   A0A069DWF7   A0A151WRK3   A0A195AWD9   E0VUG3   A0A195FDR5   A0A2A3EQ55   A0A087ZZQ7   A0A195BY37   A0A158NHW9   E2AV88   A0A0A9XCE0   A0A0A9XMQ0   A0A146LDP0   A0A0K8SR27   A0A0A9YAA1   E9JB51   T1I0X7   A0A147BRV8   A0A131XTJ0   A0A1J1HLK0   A0A336MUV5  

PDB

5WJQ     E-value=1.40158e-30,     Score=333

KEGG

101739116    no KO assigned | (RefSeq) zinc finger protein OZF

GO

GO:0003676   GO:0006417   GO:0003729   GO:0046872   GO:0003677   GO:0046983   GO:0005525   GO:0000166   GO:0008408   GO:0005112   GO:0015930  

PANTHER

PTHR10603  

Length:

556

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00014

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00810

outside

1  -  556

 

 

Pi

267.152984

Theta

210.708257

Tajima's D

1.464457

CLR

0.026002

CSRT

0.777661116944153

Interpretation

Uncertain