Silkworm Genome Informatics Database

Gene

KWMTBOMO14838

Pre Gene Modal

BGIBMGA002351

Annotation

PREDICTED:_zinc_finger_protein_420-like_[Papilio_polytes]

Location

Bomo_Chr24(-):16111179-16129200 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.834

CDS

ATGAACGTTGTAACATTAGACATAGACCCACTGAGCAGCTACGAGTACCCTTACGATTATGAAAACATACCGGAGCCCTATCCATACGTGCAGGATGTCAAAAACGAATGCCACTACCAGTACGGGCAAAATTATCAACACACTCAGCAAAGTAATGTTGTTGAAGACAAACCACCCGAAGTTCCTGCAGAGAAGATTGCCGTTGAAAATAATGCTGAAGATACAGCGAAATCAGATGTCAAACAAGATTTAAAACCAGTCTTAGAAGACGAGCAGAAGCCTAAAGTCAAGAAAAGCAATTACTGGTCGATTAAAATCAAGGAGAAGAATTTTTCCTTCTACGGATGCGCCCTGTGCAACATTAGTTACTGCGAACTCCAAATGCTCGATCAGCATATGACGACGCACAAGGACAGGCTGACCAGCTACGATTTGAGAGTGAAAAATCAAATTAAACGGAAGAAAATTAAAAAAGAAAAGAAGATTAAGAAGAGGATCAAAATTGAGAAAACGGAAGACGGGATAGAGATTAAGCCAGAAGAGGGTTTTATTGGTGAGGAGAAGGCTTCAAATTATAACAACGACAAGGTTATGTCGGATAATGATAAACAAGATAATGATGAGCGTAAAGATAACAATGCTAACACAACAAAGAAGAGAGTAGGCAAGAAAGTGGAGTTATTGAAGAAGCAATGTACAGATGATTTACAGAAAATATATAAATGCTTCGCTTGTGGAAAACAATTCACTTTGAGTTACTATTTGAGGCTACATGTGCGTTCACATACAGATGAAAAACCCTACACGTGTGCCGAGTGTGGGCAATCGTTCATAACGGCCAGCAAACTCGGCAGACACAATAAACGGATACACTTAGCCATCAGATACCAGTGCAGGATATGTTACAAGTTCTTTTCACAATTTGACCTATTGAAAAGGCATTTCGATAAGAAACATGCTGACGACAAACTCGAAGGAGAACCATATGATTACAACGCCATCTTGCCGTATTTGAAAGAGTTAGAGGAAGAGTTGAAGGAGAAGTCAGAGAAAGAGAAGCAGCTCAAGACCGAGGAGACTTGGCCCGATCAGTGGCAGGCAGGCGACAAGAAACCTGACACTGACACTGTTGAAACTGATATGCTGAATGTGAATGTGCAGCAAGCAGACGTCAAGACACCCCTGGCTGGAGTGGTCTCACCACCGCGGACGGTAGTCGCCGACGTGCTGTACAGCGCGGTGAAACTGGAGAATGAAGATGACAACAATGATGACGTCACGGCCGATGACGTCACCGCCGATGACTTGAAAGATGATAGCAACTCCGACGAAGACTATTTCCCTTCAAACACTTGGGCGACCGTGTCTCCGGCCCGAAGTCCGCAGCCGGCCTCGAACCGGCGCGCGAGTGGCAAGCTGACCTGTCAGATCTGCAACAAGACCATCAGCTCCGTGACGTACATGAAGGTCCACCTGAGGACCCACTCCGGGGAGAGGCCCTTCAAGTGCTACATCTGCGACCGGGGATTCATAACCTCAAGCAAAATGCACAGACATGTCCTCACCCATAACGAAGAAAATGAAATACATAGTTTGGGAGACGGCGCTGACGCGACCGGACTTAAAGAGTGA

Protein

MNVVTLDIDPLSSYEYPYDYENIPEPYPYVQDVKNECHYQYGQNYQHTQQSNVVEDKPPEVPAEKIAVENNAEDTAKSDVKQDLKPVLEDEQKPKVKKSNYWSIKIKEKNFSFYGCALCNISYCELQMLDQHMTTHKDRLTSYDLRVKNQIKRKKIKKEKKIKKRIKIEKTEDGIEIKPEEGFIGEEKASNYNNDKVMSDNDKQDNDERKDNNANTTKKRVGKKVELLKKQCTDDLQKIYKCFACGKQFTLSYYLRLHVRSHTDEKPYTCAECGQSFITASKLGRHNKRIHLAIRYQCRICYKFFSQFDLLKRHFDKKHADDKLEGEPYDYNAILPYLKELEEELKEKSEKEKQLKTEETWPDQWQAGDKKPDTDTVETDMLNVNVQQADVKTPLAGVVSPPRTVVADVLYSAVKLENEDDNNDDVTADDVTADDLKDDSNSDEDYFPSNTWATVSPARSPQPASNRRASGKLTCQICNKTISSVTYMKVHLRTHSGERPFKCYICDRGFITSSKMHRHVLTHNEENEIHSLGDGADATGLKE

Uniprot

H9IYL7 A0A0N1IAW9 A0A3S2LRL8 A0A194Q2M2

Pubmed

19121390 26354079

EMBL

BABH01041831 BABH01041832 BABH01041833 KQ460240 KPJ16396.1 RSAL01000339 + More
RVE42418.1 KQ459580 KPI99249.1

Proteomes

UP000005204 UP000053240 UP000283053 UP000053268

PRIDE

H9IYL7

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IYL7 A0A0N1IAW9 A0A3S2LRL8 A0A194Q2M2

PDB

2I13 E-value=9.55834e-11, Score=162

KEGG

101738888 no KO assigned | (RefSeq) zinc finger protein Xfin-like

GO

GO:0003676 GO:0046872 GO:0004190 GO:0006508 GO:0016701 GO:0006355 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Length:

543

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03124

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00240

outside

1 - 543

Pi

242.251952

Theta

179.382152

Tajima's D

1.636121

CLR

0.195316

CSRT

0.813309334533273

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics