SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14753
Pre Gene Modal
BGIBMGA003834
Annotation
PREDICTED:_zinc_finger_protein_OZF-like_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.544
 

Sequence

CDS
ATGAAACATAAAGCCCCCCATTCATCGTCGTACTGTACGCTGTGCTTGTTGGACATGGAGAGCGTTGAGAAATTGAAGTCGCACAAAGCAGAGGCTCACGGAATAGAATTGGACGGAACCTTCAAATGTTTTGGCTGCGAGAAAAAATGTAAAACGTGGAAAACAAGACAGAGTCACGAGATATATTTCTGTAAAGGCCTGAAAGATGGATTTAAGTGTTCGATATGCAATCGGTACTTGCCGAAACGTAGGACTTACGAGGCTCACATCCGGGACCACATACACAACAGGAAGATAAAACTCCCGGAGAAATTGTTCAAGTGCAACAAATGCTTGCAGTGCTTCAAAACGAAGCAGAGTCTAACGGAACACAGCGAAGAACACCAGGAGACGAAGAAAAACTTTGTATGTGACGCTTGTGGAAGGGTATTTTCTAGACAAGACTATCTGCACAAACACAAGCTCACCCACACAGGAGTCAGGAGATACGGCTGTCCGCACTGCGATTTCAAAGCAACGCAGAGATCTTCACTTACAGTTCACATCAGGAAGCACACGGGCGAGAAGCCGTACAGTTGTGACGTGTGCCCACAGCGTTGTATATCCAGCTCAAACCTGCGGGCTCATAGAAGGAGACACCTCGGTCTAAAGAAGTTTGAGTGTCCGATCTGCAACAAGAAGTTCGGTTACAAGACCAGCTTAGAGGAGCACGTGTCTTCGAACCACGGCCGCACCGAGCAGCACACGTGCGACCACTGCAGCGCCACGTACAGCCGGAAGCGGGGCCTGCAGCGACACCTGGCGGCGAAGCACGCGAAACAGAACGGAGCCGCAATGGAAAGCGAACCGAACCCGCAAGACAATAAAAACGAAAACGCAATGAAAGGTTACGATTTGAAAATGGAAAAGTTCTGTTGGTAG
Protein
MKHKAPHSSSYCTLCLLDMESVEKLKSHKAEAHGIELDGTFKCFGCEKKCKTWKTRQSHEIYFCKGLKDGFKCSICNRYLPKRRTYEAHIRDHIHNRKIKLPEKLFKCNKCLQCFKTKQSLTEHSEEHQETKKNFVCDACGRVFSRQDYLHKHKLTHTGVRRYGCPHCDFKATQRSSLTVHIRKHTGEKPYSCDVCPQRCISSSNLRAHRRRHLGLKKFECPICNKKFGYKTSLEEHVSSNHGRTEQHTCDHCSATYSRKRGLQRHLAAKHAKQNGAAMESEPNPQDNKNENAMKGYDLKMEKFCW

Summary

Pfam
PF00096   zf-C2H2        + More
PF07776   zf-AD
PF00651   BTB
PF01352   KRAB
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR017114   YY-1-like       
IPR011017   TRASH_dom       
IPR039705   REPIN1       
IPR000210   BTB/POZ_dom       
IPR011333   SKP1/BTB/POZ_sf       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       
SUPFAM
SSF57667   SSF57667        + More
SSF54695   SSF54695       
SSF109640   SSF109640       
PDB
2I13     E-value=3.23081e-20,     Score=241

Ontologies

Topology

Length:
306
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00018
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.04444
outside
1  -  306
 
 

Population Genetic Test Statistics

Pi
257.91792
Theta
158.739635
Tajima's D
1.723871
CLR
0.052022
CSRT
0.837758112094395
Interpretation
Uncertain
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