SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14714
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Location
Bomo_Chr24(-):13389958-13394936      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.441
 

Sequence

CDS
ATGTCGTCGGGGAACTCACCCCCGTTAATCAGCACACCCGGCCCGTCCAATAAGGGACGTCAGGCGACTCACAAGCCAACACCTGCAACCCGTACAAGCTTGACGGGACTCGGGTTGGACAGCCAGCCCGGGCCTTCGGTCGCGGCCCAGGGGTCCCCGAGGATCGGACCGAGGGAAGGTAATCTTCCCTCGTTGACCGATCCCTCCGGGCCCTCTCGGCCGCGGAAGAAGGCCAGGTCTGAGTCTGACCGAGGCTCGTCAAGCGACAAGGATAAGCGTCCGCGACTGGGTCCTTCCTCCAGATCGGAGGGAGAGGAAAGTGCGACCACATCCACCGATCATTCCTCAACTGAATCCGTGACTCCTTCCACGTCTAGATCTTCGTCCCCCTCTGGGAGCCCAATCCCAGCCAATAAACCAATTCCGAAGCCTAGGGCCCCCGCCAGGACAGGGACAGCCCTTAGGCAACTACGATCCCCTCCACGCTCTCCCTCCCCAACGTTATCCCCAATCCCGGTGGACTCAACCCGAGGTGCCCCCGCCCTAAGCGGCACGGCGGGCAACCTGGATTCCACCAGGTATATGGACCTCGAGTCCACCAGACCCCAACATATTCCCTTACCGACAAACCCCAAGCCTTCTACCTCCTACGCTGCCATGGCAGCTAGGCCAGGTATTCCTACCACCCAGAGGACTTCCCAATCCCCAAAAGCCCCTCCCCCGAGGTCGAAGGGTCGTGCCCAGGAGGTATTACGTCGACACCCACCAATTATGGTGGAGGCCCTCCCGAATTGGCCTCGCCATTTGGCGGCCATTAGGGAGCGCTTAGGTCGAGCTCCCTCGGCGCAACCCTTCGGCGCCGGTTTTAGATTTCTGCCGACGTCGGTCGAGGAGTACAGGGCGGTCCAGGCCTACCTGTCGGAGGCCTCTGCCAGGGATGGTACCATTAAATGGTACTGTTATGCCCTGGCGGAGGAGATGCCTTCTAAGGTGGCGGTCCGGGGCCTCCCTGCCGACACCGACGAGGCAGAAATAGTCAATGCCCTGAAGGAGCTGGGATTCCCGGCTCGATATGCCAGGTGCATCAGGTCCCAGAGAGGGCGACCGGGCTGCGTGTTTCACGTAGCCCTGGACCACCTCTCAAGGGACGACCTCGCCCGCTTGTACGCAGTCAACGAACTGTTGTACTTGCCGGGGGTGACAGTTGAGGGATGGCGTCCAACCCGAGGGCCCGCGCAGTGTCATCGCTGCCAGGCCTTCGGACACGCATCCTACAACTGCCATCGCGCGGTCCGCTGCGTAAGGTGTGCCGGAGAGCACATTGTAGCGGACTGCCCGAGGCCGAGGGACGGCCCATTCTCCTGCGCCAATTGTGGGAAGGACCACGTCGCCGTCGACAGACGGTGTGCGGTCTTCCGCAAACGGGCCAGGATGATGGGAGTCACCGTCCCTCCTCCTGCGCCACCGGTGCCTCGAGCCGGGGGTGCAGCTCCTCCGGCTGTACTTCCCATAGTAAGGGGGAAGGGGAAGGGGAAAGGGAAATCTTCCCTTCCCCCGGCCCCTCCCCCTCGAAACTCCATTCCGTCCGCCGTGGTAGTGGAGGCTGAGCCGTCAGCGACCACGTTGATGGCGCAGGCCAACCGGCCGCGGCGGACAAATAAACCCATTCCCGTTCCTCGTGGTCGCACTTCCGCTGGTGTCACACCTACACCTCGCCCGACCGGCGGTCCTGCACCCGGAAAAAATAGTAATAGGAACAAAAAGAAAAAACAAAAGAAAAAAGATAAAAAAAAAGAAGCACGAGAGAGAGAGGAAGCCATCAGAGATGATGATGCTGCACCTCTCGAACAATCCCAAATGGTCGTTGAGACAATGGAGGTCAACGAGGCCTCCCCTACTGCCCAAACATCGAACTCCAATCCGCCATTGCCATCGGCCCATCTGGCCGAAGACAATTCTAATCTGAACAGCCAGCCCCCCCTTCCCCCCGCCCTCAGCGCGAGCGCCGCAGCGGTCGACAGGCCTCTCAGCCTGCCGGCTTTGCTGCATGGCTGCTCACACTGTGGGAAAAATTGTCCGAGTTCAATGGCTAGCCAGGAGCTGCGCATCATTTATTGGAACCCCGACGGGATAAAGTCCCGAAAGAACGACCTGCTTGTTCTCGCCCGGGAGTACAACCCTGAGGTTCTGCTCCTGGGCGAGACCTTGTTAAAACCTCAGGATGTGTTCAGGATTCCCAACTACTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTTGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCTCATCGACAAGGTCAGTCGGTGTGAGGGTACACACCTCGGGGGGAGATATGCGGATTTATGCCGCGTATAGACCCCCGGGGCCTGAATTCCACCCTGAGGATATAAGACGGGCCCTGAATTACGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGTTCCCGACTTAACACAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCTGATGAACCCACGCACGTCCCGACCGCCGCGCGATACCAGCCCGATGTGCTGGACGTGTGTGTTCATAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGTACGACCTGGGTACCCCACATCTCCCTGTCCTGGTGACACTGGGAATGGGGCTCACCCGGGACCCCAACACCCCTGAGGGGGTCGATGACGCGGCAGTCCGCCTTATCGACTCCATCAGGGGAGCGATTGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTAGACTCCCGGCCCATCTGAAGGCGATCATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGTTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTTTCGGGGCTATGCGTGGGAGGAACGGATTGAGGAGGCCCGTGAGGACCCCTCTTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGCAATGCTGGAGCGGCAGTTCGTTCCGAATGACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCGAACCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGATGTTTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGTGAGGACGGTATTCCCTCCCTCGCATTCTTTCATTTCCCTGAAACGGTCGTGTCATATATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGATAGGAGAATTCCCTCCAGTTACCGTCCGATCACCTTGCTGTCGCATGTGGGCAAGTTGTTCGAGAGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCCCAGACCCGAGCAGTTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTCATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGTTGGTGCAGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCTTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCTCGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCTCCATTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTCGAGGGTAACCTCCAAGCGTGGGAAGTAGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCATCCAACGTCCCCTCTGCGGCCATTCTGAGGATGCAGAGGCTTTTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCGGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAGTAAGGCGTTGGCGGCCGCTCGCTGTGCGAGATTCCTCCTCCGGCCGGTGTTGGCCTCTAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGAGGCCTGGTATCACCTCATCCCGCAGGGTATGCGGGCGAGGTTACAGGTCCAGCAAAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTGGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCACCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG
Protein
MSSGNSPPLISTPGPSNKGRQATHKPTPATRTSLTGLGLDSQPGPSVAAQGSPRIGPREGNLPSLTDPSGPSRPRKKARSESDRGSSSDKDKRPRLGPSSRSEGEESATTSTDHSSTESVTPSTSRSSSPSGSPIPANKPIPKPRAPARTGTALRQLRSPPRSPSPTLSPIPVDSTRGAPALSGTAGNLDSTRYMDLESTRPQHIPLPTNPKPSTSYAAMAARPGIPTTQRTSQSPKAPPPRSKGRAQEVLRRHPPIMVEALPNWPRHLAAIRERLGRAPSAQPFGAGFRFLPTSVEEYRAVQAYLSEASARDGTIKWYCYALAEEMPSKVAVRGLPADTDEAEIVNALKELGFPARYARCIRSQRGRPGCVFHVALDHLSRDDLARLYAVNELLYLPGVTVEGWRPTRGPAQCHRCQAFGHASYNCHRAVRCVRCAGEHIVADCPRPRDGPFSCANCGKDHVAVDRRCAVFRKRARMMGVTVPPPAPPVPRAGGAAPPAVLPIVRGKGKGKGKSSLPPAPPPRNSIPSAVVVEAEPSATTLMAQANRPRRTNKPIPVPRGRTSAGVTPTPRPTGGPAPGKNSNRNKKKKQKKKDKKKEAREREEAIRDDDAAPLEQSQMVVETMEVNEASPTAQTSNSNPPLPSAHLAEDNSNLNSQPPLPPALSASAAAVDRPLSLPALLHGCSHCGKNCPSSMASQELRIIYWNPDGIKSRKNDLLVLAREYNPEVLLLGETLLKPQDVFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFSSTRSVGVRVHTSGGDMRIYAAYRPPGPEFHPEDIRRALNYDSRPALLVGDLNAKHVAWGSRLNTAVGRRLLEDADRGDYSVVGPDEPTHVPTAARYQPDVLDVCVHKGLRCPVTIEALYDLGTPHLPVLVTLGMGLTRDPNTPEGVDDAAVRLIDSIRGAIDQATTLVPSGGPRGRLPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSFRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAAMLERQFVPNDSAPSEAAFHQSVEESVANLLSSPVPPLGDDVFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRIPSSYRPITLLSHVGKLFERLLLRRVSPHILPRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIHKLVQNTDLQHAYVRLLGSYLEGRSFFVAVEGAKSSVRPVSAGVPQGSVLAPFLYALYTNDIPTLEGNLQAWEVDVKLALFADDSAYFSSSNVPSAAILRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHASKALAAARCARFLLRPVLASRLPVRTKLGIYKTYVRSRITYAAEAWYHLIPQGMRARLQVQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMVR

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6AR3     E-value=5.95252e-05,     Score=116

Ontologies

KEGG
101740984    no KO assigned | (RefSeq) serine/arginine repetitive matrix protein 1-like
GO
GO:0003676   GO:0008270   GO:0017038   GO:0006605   GO:0006886   GO:0005515   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Topology

Length:
1577
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00364
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1577
 
 

Population Genetic Test Statistics

Pi
325.247732
Theta
207.022802
Tajima's D
1.630128
CLR
0.499225
CSRT
0.816259187040648
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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