Gene

KWMTBOMO14712

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr24(-):13364670-13367416      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.011

CDS

ATGGCTAGCCAAGAGCTTCGCGTCATCTATTGGAACCCCGACGGGATAAAGTCCCGGAAAAACGAGCTGCTTGTTCTCGCCCGGGAGTACAACCCTGAGGTTCTGCTCCTGGGCGAGACCTTGTTAAAGCCTCAGGATGTGTTCAGGATTCCCAACTATTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTTGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCTCATCGACAAGGTCAGTCGGTGTGAGGGTACACACCTCGGGGGGAGATATGCGGATTTATGCCGCGTATAGACCCCCGGGGCCTGAATTTCACCCTGAGGATATAAGACGGGCCCTGAATTACGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGTTCCCGACTTAACACAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCTGATGAACCCACGCACGTCCCGACCGCCGCGCGATACCAGCCCGATGTGCTGGACGTGTGTGTTCATAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGTACGACCTGGGTACCCCACATCTCCCTATCCTGGTGACACTGGGAATGGGGCTCACCCGGGTTGCGACTTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGACTAGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATTGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTAGACTCCCGGCCCATCTGAAGGCGATCATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGTTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTTCCGGGGCTACACGTGGGAGGAACGGATTGAGGAGGCCCGTGAGGACCCCTCTTCTGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGCAATGCTGGAGCGGCAGTTCGTTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCGAACCTACTCTCCTCCCCGGTGCCTCCGTTGGGAGATGATGCTTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGTGAGGACGGTATTCCCTCCCTCGCATTCTTCCACTTCCCTGAAACGGTCGTGTCATATATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTACCGTCCGATCACCTTGCTGTCGCATGTGGGCAAGTTGTTCGAGAGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCCCAGACCCGAGCAGTTCGGGTTTCGCAGCGGCCACTCGACAACGCTGCAATTGGTCCGCGTCATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAAGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGCTGGTGCAGAACACGGACCTCCAGCACGCCTACGTGCGATTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCTTTGTCGCGGTCGAGGGCGCCAAATCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCTCAGGGAAGCGTCCTGGCTCCATTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTCGAGGGTAACCTCCAAGCGTGGGAAGTAGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCATCCAACGTCCCCTCTGCGGCCATTCTGAGGATGCAGAGGCTTTTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCGGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAATAAGGCGTTGGCGGCCGCTCGCTGTGCGAGATTCCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGAGGCCTGGTATCACCTCATCCCGCAGGGTATGCGGGCGAGGTAA

Protein

MASQELRVIYWNPDGIKSRKNELLVLAREYNPEVLLLGETLLKPQDVFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFSSTRSVGVRVHTSGGDMRIYAAYRPPGPEFHPEDIRRALNYDSRPALLVGDLNAKHVAWGSRLNTAVGRRLLEDADRGDYSVVGPDEPTHVPTAARYQPDVLDVCVHKGLRCPVTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGRLPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSFRGYTWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAAMLERQFVPNNSAPSEAAFHQSVEESVANLLSSPVPPLGDDAFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRVSPHILPRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIHKLVQNTDLQHAYVRLLGSYLEGRSFFVAVEGAKSSVRPVTAGVPQGSVLAPFLYALYTNDIPTLEGNLQAWEVDVKLALFADDSAYFSSSNVPSAAILRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHANKALAAARCARFLLRPVLASRLPVRTKLGIYKTYVRSRITYAAEAWYHLIPQGMRAR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   A0A2A4JQF8   X1WNI2   J9LFC9   X1WZH0   A0A1Y1NA23   + More
A0A2J7PBY3   A0A2J7QY69   A0A2S2NJB5   A0A2J7QR37   A0A2J7PU96   J9LC21   A0A2J7Q6J2   A0A224X6Q4   V5GNJ2   A0A2J7RE85   A0A224XB44   A0A023EYS8   J9JS95   A0A2M4CV52   A0A2J7PDM0   J9KPF1   X1WLB2   A0A069DZL8   A0A2J7R4U3   A0A2M4CV42   A0A2J7QB68   A0A087UCW3   A0A2J7R7D0   A0A1Y1K0C8   X1WXR6   A0A224X6T4   A0A139W8G9   A0A2S2Q383   A0A2S2NGV8   A0A2J7PMN4   A0A2J7R098   A0A2J7RQ52   A0A2J7PSM7   A0A2J7Q9Z1   A0A2J7QES2   A0A2H8TF37   V5GNF3   A0A224X7Z3   A0A0A9YJ00   A0A0A9YU04   A0A2S2PPK8   Q9BPQ0   A0A2A4IUM2   A0A2J7PVX3   A0A0J7MTN6   Q04135   A0A2A4K918   K7IN67   Q9XXW0   Q6R811   A0A023F0I3   A0A069DX78   A0A087U3K8   A0A2J7PP17   A0A224XIB0   J9LF85   A0A224XJI0   Q961V7   A0A224X6U5   X1XGU0   A0A2S2NPG3   A0A2S2PA10   A0A023EZE6   J9LF86   A0A224XHW8   A0A023F069   P21328   A0A2S2QEE0   A0A2S2P6S3   A0A1Y1KFR3   A0A2S2R9D4   A0A1B6EGD8   X1WQR0   A0A2J7RMG0   A0A2S2PHL7   Q93137   A0A224X6R6   O96546   A0A146KRW8   A0A224XF24   A0A1Q3G5J4   A0A142LX53   A0A0V0G5B6   A0A142LX26   A0A2S2P698   A0A0J7K7J8   A0A139WA11   A0A1Y1LKN6   A0A0N1PFV1   A0A224X6W2   A0A2J7QFL0   A0A2J7RD70   A0A2M4BD83  

EC Number

2.7.7.49

Pubmed

28004739    25474469    26334808    18362917    19820115    25401762    + More
1705654    20075255    10333566    14745026    2463954    3040362    1714378    10380107    26823975    25527032    26354079   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02008153    ABLF02008462    + More
ABLF02008464    ABLF02023911    ABLF02034467    GEZM01008457    JAV94772.1    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    GGMR01004661    MBY17280.1    NEVH01011985    PNF31054.1    NEVH01021205    PNF19912.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01017470    PNF24199.1    GFTR01008279    JAW08147.1    GALX01005299    JAB63167.1    NEVH01005277    PNF39135.1    GFTR01008262    JAW08164.1    GBBI01004395    JAC14317.1    ABLF02028535    ABLF02028545    GGFL01004957    MBW69135.1    NEVH01026386    PNF14434.1    ABLF02041767    ABLF02042518    ABLF02057746    GBGD01000415    JAC88474.1    NEVH01007402    PNF35856.1    GGFL01005012    MBW69190.1    NEVH01016302    PNF25823.1    KK119261    KFM75202.1    NEVH01006736    PNF36716.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    GFTR01008261    JAW08165.1    KQ973342    KXZ75569.1    GGMS01002992    MBY72195.1    GGMR01003407    MBY16026.1    NEVH01023979    PNF17579.1    NEVH01008277    PNF34262.1    NEVH01001347    PNF42959.1    NEVH01021925    PNF19341.1    NEVH01016340    PNF25410.1    NEVH01015305    PNF27092.1    GFXV01000908    MBW12713.1    GALX01005359    JAB63107.1    GFTR01007929    JAW08497.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGMR01018716    MBY31335.1    AB055391    BAB21761.1    NWSH01007753    PCG62823.1    NEVH01020940    PNF20481.1    LBMM01018163    KMQ83860.1    X17551    CAA35587.1    NWSH01000032    PCG80496.1    AB018558    BAA76304.1    AY508487    AAS13459.1    GBBI01003747    JAC14965.1    GBGD01000389    JAC88500.1    KK118005    KFM71947.1    NEVH01023280    PNF18085.1    GFTR01008246    JAW08180.1    ABLF02017813    GFTR01008257    JAW08169.1    AY047531    AAK77263.1    GFTR01008251    JAW08175.1    ABLF02055645    GGMR01006408    MBY19027.1    GGMR01013409    MBY26028.1    GBBI01004571    JAC14141.1    ABLF02017815    GFTR01008254    JAW08172.1    GBBI01003810    JAC14902.1    M22874    M38643    GGMS01006359    MBY75562.1    GGMR01012443    MBY25062.1    GEZM01084969    JAV60363.1    GGMS01017365    MBY86568.1    GEDC01000337    JAS36961.1    ABLF02050434    ABLF02064867    NEVH01002556    PNF42024.1    GGMR01016296    MBY28915.1    U07847    AAA17752.1    GFTR01008269    JAW08157.1    AF081103    AAC72921.1    GDHC01020244    JAP98384.1    GFTR01008038    JAW08388.1    GFDL01000006    JAV35039.1    KU543687    AMS38379.1    GECL01003538    JAP02586.1    KU543673    AMS38352.1    GGMR01012305    MBY24924.1    LBMM01012041    KMQ86458.1    KQ971729    KYB24751.1    GEZM01053022    JAV74219.1    KQ459265    KPJ02064.1    GFTR01008260    JAW08166.1    NEVH01014858    PNF27387.1    NEVH01005295    PNF38784.1    GGFJ01001822    MBW50963.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000235965    UP000054359    UP000007266    + More
UP000036403    UP000002358    UP000053268   

PRIDE

Q9BPQ0    Q04135    Q9XXW0    Q961V7    P21328    Q93137    + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF07727   RVT_2
PF03372   Exo_endo_phos
PF03184   DDE_1

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR004875   DDE_SF_endonuclease_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   X1WNI2   J9LFC9   X1WZH0   A0A1Y1NA23   + More
A0A2J7PBY3   A0A2J7QY69   A0A2S2NJB5   A0A2J7QR37   A0A2J7PU96   J9LC21   A0A2J7Q6J2   A0A224X6Q4   V5GNJ2   A0A2J7RE85   A0A224XB44   A0A023EYS8   J9JS95   A0A2M4CV52   A0A2J7PDM0   J9KPF1   X1WLB2   A0A069DZL8   A0A2J7R4U3   A0A2M4CV42   A0A2J7QB68   A0A087UCW3   A0A2J7R7D0   A0A1Y1K0C8   X1WXR6   A0A224X6T4   A0A139W8G9   A0A2S2Q383   A0A2S2NGV8   A0A2J7PMN4   A0A2J7R098   A0A2J7RQ52   A0A2J7PSM7   A0A2J7Q9Z1   A0A2J7QES2   A0A2H8TF37   V5GNF3   A0A224X7Z3   A0A0A9YJ00   A0A0A9YU04   A0A2S2PPK8   Q9BPQ0   A0A2A4IUM2   A0A2J7PVX3   A0A0J7MTN6   Q04135   A0A2A4K918   K7IN67   Q9XXW0   Q6R811   A0A023F0I3   A0A069DX78   A0A087U3K8   A0A2J7PP17   A0A224XIB0   J9LF85   A0A224XJI0   Q961V7   A0A224X6U5   X1XGU0   A0A2S2NPG3   A0A2S2PA10   A0A023EZE6   J9LF86   A0A224XHW8   A0A023F069   P21328   A0A2S2QEE0   A0A2S2P6S3   A0A1Y1KFR3   A0A2S2R9D4   A0A1B6EGD8   X1WQR0   A0A2J7RMG0   A0A2S2PHL7   Q93137   A0A224X6R6   O96546   A0A146KRW8   A0A224XF24   A0A1Q3G5J4   A0A142LX53   A0A0V0G5B6   A0A142LX26   A0A2S2P698   A0A0J7K7J8   A0A139WA11   A0A1Y1LKN6   A0A0N1PFV1   A0A224X6W2   A0A2J7QFL0   A0A2J7RD70   A0A2M4BD83  

PDB

6AR3     E-value=4.30071e-05,     Score=115

KEGG

101739313    no KO assigned | (RefSeq) uncharacterized LOC101739313

GO

GO:0003964   GO:0004519   GO:0003676  

Length:

824

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02512

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00048

outside

1  -  824

 

 

Pi

22.638004

Theta

30.079003

Tajima's D

1.607721

CLR

0.000828

CSRT

0.809159542022899

Interpretation

Uncertain