Silkworm Genome Informatics Database

Gene

KWMTBOMO14662

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_gastrula_zinc_finger_protein_XlCGF49.1-like_[Bombyx_mori]

Location

Bomo_Chr24(-):12203908-12206191 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.034

CDS

ATGTCCGATATCATGATAGATCCGCTGCTGATCAAAGAGGAGATCATAGAGATATCCGATGAGGAAGAGGCCCCAAAGAAACGGAGGGTACGTAAGAAAAGGGCCCCATCGGAGCGCTTGCCTTGCGATCAGTGCGAGAAGACATTTGTCACGAATTACGAGCTAAAGAAACACACGAGGACCCACACGGGTGAAAGACCCTACATGTGCACGACGTGCGGCAAAACCTATACCCAACTAGAAGAACAATCTGGTGATGCACCTGAAGATGCACTTAGGGGACAGGGCCCACGAGTGTCCGGTCTGCAGAAAGAGGTTCATGACGAAAAGCAAACTGGCCTCGCATTCGAAGAGGCATGA

Protein

MSDIMIDPLLIKEEIIEISDEEEAPKKRRVRKKRAPSERLPCDQCEKTFVTNYELKKHTRTHTGERPYMCTTCGKTYTQLEEQSGDAPEDALRGQGPRVSGLQKEVHDEKQTGLAFEEA

Uniprot

G3PKB3

Proteomes

UP000007635

Pfam

PF00096 zf-C2H2

Interpro

IPR003656   Znf_BED        + More
IPR036236   Znf_C2H2_sf
IPR013087   Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

G3PKB3

PDB

2COT E-value=4.68014e-07, Score=122

KEGG

101735789 no KO assigned | (RefSeq) gastrula zinc finger protein XlCGF49.1-like

GO

GO:0003677 GO:0046872 GO:0003676 GO:0006629 GO:0007165 GO:0008081 GO:0005234 GO:0003824 GO:0008152 GO:0016491 GO:0015930

Length:

119

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04302

outside

1 - 119

Pi

169.313115

Theta

171.874993

Tajima's D

0.433163

CLR

3.489936

CSRT

0.495125243737813

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics