Gene

KWMTBOMO14609

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr24(+):11184654-11186730      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.143

CDS

ATGCGGACTTTCCGGGGTGACTCCTGGGAGGGGGGACTGTTGGACGCGTCCGACGACCGTACGATGGCCCCCCTTCGCCGCATCTGTCGCCGGCTCACCCACAAGCCTTCCCCCACTTGTCCCCTGGAGGATGAGGCGGGAAGACGGTGTTTTACACCGGTGGCTCGTGCCGAAGTCCTGGCCAACTCGCTGGAGGGGCAGTTCACTCCGAATGTCTCTGCACCCTCGATGGTTGCATTCCATCGGGAGGTGGCAGAGGGTGTAATCCAACTCCTCAAATCGGAATCGCCGGGAGTCGAGCTGGGAGATGACGATCTAGTCACTCCCAGCGAGGTGCGCCTCCTCATCAAGTTGATGAAGAGGCGCAAAGCCCCCGGCGAGGACGGTATTCCTCCCCTCGCCCTGCAAAACCTCCCACCCTCAATCGTGTCAGCAATGACACGATTGTTTAATTCCATTCTCCGGGTAGGACACTTCCCTGGAACTTGGAAATTGGGCAAGATTATCGTCTTGCCCAAACCCGGCAAGGACAGGAGAAAGCCCTCCAGTTACCGACCGATTACCTTGCTGTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTTCTGAGGAGAATATCGCCGTATATTCTCCTCAGGCCGGAGCAATTCGGCTTTAGAAGCGGCCACTCGACGACTCTGCAACTGACCCGTGTCCTGCATCACTTGGCGGACCGGCGTAACTCGGGCCAATACACGGTCGCAGTCCTTCTCGATATCGAGAAGACCTTCGACCGTGTGTGGCACGAGGGGTTGGTCCACAAGCTGCGGGACGCGGGCCTACCGCACGCTCACGTGCGACTGCTCGGGTCGTATCTGGAGGGCAGAACCTTCTTTGTCGCGGTCGAGGGCGCTCGGTCTTCCGTGCGTCCCATTACGGCCGGAGTTCCTCAGGGTAGTGTCCTATCTCCTATCCTATACGCCCTCTACACCAATGACATCCCCACCCTGATGGGTCACCTTCGGGCGTGGGAGGAGGACGTGAAGTTGGCCTTGTTCGCTGACGACTCGGCCTACTTCTCGTCCTCTCCGTTCCCCTCTGCAGCCATTATGAGGATGCAGAGGCTTTTGGATTTACTGCCCCAGTGGCTGGACCGTTGGAGAGTCGCGGTCAATGTGGGAAAGACCGCGGCCTTACTCTACGGTCCGGTCCGTATCAGAGTCGTCCCAAAGAAACTCAGTCTCCGAGGTGTGAATGTCGAGTTCAGGACCATGGTCCGGTATCTCGGATGCGACATCGACCGCTCCTTGAGCATGGTCGCGCACGTCAACCGAGTCATCGGTCAGACTCGCGCGGCCAGGTTCTTGCTGCGGCCGGTACTTGCGTCCGGGCTTCCGACCAGGACCAAACTCGCCATTTACAAGACATACGTCCGTTCCCGCCTCACATACGCTGCTGAGGCCTGGTATCACCTGTTGTCGCCGTCCCAGCGATCTAGGTTGCAGGCCCAGAGTCTTTCCCTCCGTAATATCGTCGGGGCCGGGCGGTACGTCAGAAATGACGTCATCGCCCGGGACCTAGGGGTGGAGTCGCTCAGGGAGTTCGTGACTAGGCTCGCTCGTAATATGTACGAGCGAGCCGAAAACGGCCCCATGAGCATCTCCACAACATAG

Protein

MRTFRGDSWEGGLLDASDDRTMAPLRRICRRLTHKPSPTCPLEDEAGRRCFTPVARAEVLANSLEGQFTPNVSAPSMVAFHREVAEGVIQLLKSESPGVELGDDDLVTPSEVRLLIKLMKRRKAPGEDGIPPLALQNLPPSIVSAMTRLFNSILRVGHFPGTWKLGKIIVLPKPGKDRRKPSSYRPITLLSHVGKLFERLLLRRISPYILLRPEQFGFRSGHSTTLQLTRVLHHLADRRNSGQYTVAVLLDIEKTFDRVWHEGLVHKLRDAGLPHAHVRLLGSYLEGRTFFVAVEGARSSVRPITAGVPQGSVLSPILYALYTNDIPTLMGHLRAWEEDVKLALFADDSAYFSSSPFPSAAIMRMQRLLDLLPQWLDRWRVAVNVGKTAALLYGPVRIRVVPKKLSLRGVNVEFRTMVRYLGCDIDRSLSMVAHVNRVIGQTRAARFLLRPVLASGLPTRTKLAIYKTYVRSRLTYAAEAWYHLLSPSQRSRLQAQSLSLRNIVGAGRYVRNDVIARDLGVESLREFVTRLARNMYERAENGPMSISTT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   A0A2A4JQF8   X1XGU0   J9LF86   A0A1Y1KUU7   X1WQR0   + More
J9LF85   J9KCZ4   X1WNI2   A0A2S2RAN7   A0A2S2NJB5   X1WN18   J9LFC9   X1WZH0   J9JS95   J9KEU4   J9KPF1   J9LC21   A0A1Y1NA23   J9L876   A0A087U2S8   A0A2J7Q5G9   A0A2J7QEZ4   A0A2J7Q059   A0A2J7PMP9   A0A2J7RM10   A0A2J7PMP6   Q9XXW0   A0A2J7Q4F7   A0A2J7RIW7   A0A2J7R4B7   A0A2J7QUJ9   A0A2J7RS77   A0A2J7RPU2   A0A139W8G9   A0A2J7Q2R1   V5GNJ2   A0A2J7Q0Q6   A0A182GA28   A0A139WA11   A0A2J7RB54   Q9BPQ0   A0A2J7R2E1   A0A2J7QFL0   A0A2J7R6U1   A0A087UCW3   A0A2J7RKP3   Q93137   A0A2J7Q1Y9   A0A2J7QR37   A0A2J7PU96   J9KKL3   Q8T456   A0A2J7QY69   A0A2J7PBY3   A0A2J7PDS9   A0A2J7PP17   X1WMU5   A0A2J7RS81   A0A2J7Q6J2   P21328   A0A2J7Q627   X1WWC4   A0A1Q3G5F7   A0A224XF24   A0A2J7PQB5   A0A0N1PFV1   A0A2S2PX53   A0A2A4K8E7   A0A2S2QJM7   X1X928   A0A2J7RL12   A0A2J7RE85   A0A0C9RJA4   A0A2J7QTW2   A0A2A4K918   A0A0N0PA09   A0A224X6Q4   K7IN67   A0A2S2QTZ8   A0A023EYS8   A0A0J7MTN6   A0A023EZE6   A0A087U3E2   A0A2S2P0Y0   A0A224XIB0   O96546   A0A2H8TV33   A0A0A9YJ00   A0A0A9YU04   A0A2S2Q823   A0A0A9Y7Q6   A0A2S2QEE0   A0A2J7R7D0   A0A087T1W0   A0A087TNS3   A0A2S2Q7E7   A0A224XB44  

EC Number

2.7.7.49

Pubmed

28004739    10333566    18362917    19820115    26483478    2463954    + More
3040362    1714378    26354079    20075255    25474469    10380107    25401762   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02055645    ABLF02017815    + More
GEZM01074951    JAV64378.1    ABLF02050434    ABLF02064867    ABLF02017813    ABLF02008463    ABLF02008153    ABLF02008462    ABLF02008464    GGMS01017914    MBY87117.1    GGMR01004661    MBY17280.1    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02023911    ABLF02034467    ABLF02028535    ABLF02028545    ABLF02040650    ABLF02040651    ABLF02056776    ABLF02041767    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GEZM01008457    JAV94772.1    ABLF02033522    KK117880    KFM71667.1    NEVH01017559    PNF23833.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01020071    PNF21969.1    NEVH01023961    PNF17613.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    AB018558    BAA76304.1    NEVH01018383    PNF23463.1    NEVH01003017    PNF40781.1    NEVH01007443    PNF35684.1    NEVH01010546    PNF32261.1    NEVH01000280    PNF43672.1    NEVH01001355    PNF42855.1    KQ973342    KXZ75569.1    NEVH01019080    PNF22876.1    GALX01005299    JAB63167.1    NEVH01019964    PNF22161.1    JXUM01155316    KQ572171    KXJ68070.1    KQ971729    KYB24751.1    NEVH01005938    PNF38077.1    AB055391    BAB21761.1    NEVH01007838    PNF34986.1    NEVH01014858    PNF27387.1    NEVH01006754    PNF36554.1    KK119261    KFM75202.1    NEVH01002716    PNF41415.1    U07847    AAA17752.1    NEVH01019376    PNF22596.1    NEVH01011985    PNF31054.1    NEVH01021205    PNF19912.1    ABLF02029306    ABLF02029314    ABLF02060138    AY089343    AAL90081.2    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01026154    PNF14491.1    NEVH01023280    PNF18085.1    ABLF02014862    ABLF02014866    ABLF02061908    NEVH01000269    PNF43694.1    NEVH01017470    PNF24199.1    M22874    M38643    NEVH01017542    PNF24034.1    ABLF02003961    ABLF02059872    GFDL01000004    JAV35041.1    GFTR01008038    JAW08388.1    NEVH01022639    PNF18527.1    KQ459265    KPJ02064.1    GGMS01000737    MBY69940.1    NWSH01000032    PCG80497.1    GGMS01008766    MBY77969.1    ABLF02066620    NEVH01002704    PNF41489.1    NEVH01005277    PNF39135.1    GBYB01008290    JAG78057.1    NEVH01011193    PNF32021.1    PCG80496.1    KQ459259    KPJ02068.1    GFTR01008279    JAW08147.1    GGMS01012005    MBY81208.1    GBBI01004395    JAC14317.1    LBMM01018163    KMQ83860.1    GBBI01004571    JAC14141.1    KK117974    KFM71881.1    GGMR01010373    MBY22992.1    GFTR01008246    JAW08180.1    AF081103    AAC72921.1    GFXV01005866    MBW17671.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGMS01004685    MBY73888.1    GBHO01016496    JAG27108.1    GGMS01006359    MBY75562.1    NEVH01006736    PNF36716.1    KK113014    KFM59099.1    KK116089    KFM66762.1    GGMS01004444    MBY73647.1    GFTR01008262    JAW08164.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000054359    UP000235965    UP000007266    + More
UP000069940    UP000249989    UP000053268    UP000002358    UP000036403   

PRIDE

Q9XXW0    Q9BPQ0    Q93137    Q8T456    P21328   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03184   DDE_1
PF07530   PRE_C2HC
PF07727   RVT_2
PF03372   Exo_endo_phos
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR004875   DDE_SF_endonuclease_dom       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR036875   Znf_CCHC_sf       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   X1XGU0   J9LF86   A0A1Y1KUU7   X1WQR0   + More
J9LF85   J9KCZ4   X1WNI2   A0A2S2RAN7   A0A2S2NJB5   X1WN18   J9LFC9   X1WZH0   J9JS95   J9KEU4   J9KPF1   J9LC21   A0A1Y1NA23   J9L876   A0A087U2S8   A0A2J7Q5G9   A0A2J7QEZ4   A0A2J7Q059   A0A2J7PMP9   A0A2J7RM10   A0A2J7PMP6   Q9XXW0   A0A2J7Q4F7   A0A2J7RIW7   A0A2J7R4B7   A0A2J7QUJ9   A0A2J7RS77   A0A2J7RPU2   A0A139W8G9   A0A2J7Q2R1   V5GNJ2   A0A2J7Q0Q6   A0A182GA28   A0A139WA11   A0A2J7RB54   Q9BPQ0   A0A2J7R2E1   A0A2J7QFL0   A0A2J7R6U1   A0A087UCW3   A0A2J7RKP3   Q93137   A0A2J7Q1Y9   A0A2J7QR37   A0A2J7PU96   J9KKL3   Q8T456   A0A2J7QY69   A0A2J7PBY3   A0A2J7PDS9   A0A2J7PP17   X1WMU5   A0A2J7RS81   A0A2J7Q6J2   P21328   A0A2J7Q627   X1WWC4   A0A1Q3G5F7   A0A224XF24   A0A2J7PQB5   A0A0N1PFV1   A0A2S2PX53   A0A2A4K8E7   A0A2S2QJM7   X1X928   A0A2J7RL12   A0A2J7RE85   A0A0C9RJA4   A0A2J7QTW2   A0A2A4K918   A0A0N0PA09   A0A224X6Q4   K7IN67   A0A2S2QTZ8   A0A023EYS8   A0A0J7MTN6   A0A023EZE6   A0A087U3E2   A0A2S2P0Y0   A0A224XIB0   O96546   A0A2H8TV33   A0A0A9YJ00   A0A0A9YU04   A0A2S2Q823   A0A0A9Y7Q6   A0A2S2QEE0   A0A2J7R7D0   A0A087T1W0   A0A087TNS3   A0A2S2Q7E7   A0A224XB44  

PDB

6AR3     E-value=4.69649e-06,     Score=122

KEGG

105841867    no KO assigned | (RefSeq) uncharacterized LOC105841867

GO

GO:0003676   GO:0003964   GO:0004519   GO:0008270  

Length:

549

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02101

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.00247

outside

1  -  549

 

 

Pi

238.588198

Theta

152.964977

Tajima's D

2.898327

CLR

27.346522

CSRT

0.973751312434378

Interpretation

Possibly Balancing Selection