SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14573
Pre Gene Modal
BGIBMGA008740
Annotation
unnamed_protein_product_[Bombyx_mori]
Location
Bomo_Chr24(+):10571459-10586526      View in EpiBrowser
Transcription factor
zf-C2H2
Location in the cell
Nuclear   Reliability : 3.483
 

Sequence

CDS
ATGGAGTTATCTGCTGCAAGTCTCTTAACACAGCTTATGATACGTGTCTCGACTCGATTGTTGTCCCATATTACCATAAAGCAACACATATGCTGGTCAGACAGTACCATTGTCCTAGCATGGCTAAACCCACCTCCTCATAGACTTCAGGTCTTTGAAGCTAACAGGGTTGCCAAGATAACATCCAATCCAATCACCTCCACATGGAAACATGTTCCTACAAACCTGAACCCTGCAGACTGTGCGAGCAGGGGAATGTCTGCCCAGTCACTATCGGCTCATGATCTTTGGTGGTCTCCTAGCTGGCTGAAGGAGCCTCCTGACACCTGGCCCAAAATGCCTCCTGCTCTAGGCCACCATGCATTACCAGGTCTGAAGCCCAAGAAAGTACCAGCTCATATAGCAGTTCCTGACCTCGACCTTGACTTGCTTACTCGATTCAGTTCTCTCGACAAGCTCGTTGGAGTGACAGCTTGCATAAAACGCTTTATTTTCAATTGTAGACACAACTCAACTGATAGGCGCTCTGGTCCCTTGACAGTTGGAGAACGTAGAGATGCTCTGTTATTCTGGGTTCGCTCTGTTCAACACAATGAGTTTGCGGAAGATATTTACCGTCTTCAGGCAGGCAAGATTTGTACCGTTCGACTTCAGCGTCTTTCACCCTTGATGAAAGATGATCTCTTGAGAGTTGGTGGTCGCCTCACTCATGCGCCAATAAGATACGATGCTCAGCATCCTCTCGTTCTGCCCAGCTCTAGCCCACTAGTTGATCTCATCATAGACCACTATCACAGAATAAACTGTCATCCTGGGGCTAACACATTACACGCTATCCTCCGTCAGCAGTTCTGGATACTCTCAGCACGTCGTGTCATCAGGCATCGCGTGTACAAATGCATTAGATGTTTCCGATATCGCGCTCAGGCCAGGGCTCCGTTGATGGCTGATTTGCCCGCAGACAGAGTCACACCCCAGCCACTCATCCAAGCTCTCTCTCAGCGTTTTTGGACTCTGTGGACCAAATCCTATCTCCATACCCTCCAAACCCGCTCCAAATGGCTTTCCACATCCTCACCTCCTCAAGTTGGAGAGCTCGTCCTCATCAAAGAGGACAATCAGCCCCCGCTGCAATGGAAACTTGGAAGGATTATCCGCACGTTACCCGGCAAGGATGGAGTGATCAGAGTCGTGGATTTAGACACGAAGCATGGAAGTCTGCGGAGACCTGTGTTCAATGGAAGGGCTGTGGGAGATCGGGTTTACCCTGAAGCACATGCGGGCGATTTCCGCACACTCGGGCCAACTGGGTTGCCTGATGTTTGTTCAGCTACAACAACGTCCCGGGCATATACGAAGTACGAGAACTACTTTGTATGCCCGGGGCTATCATCAAAGCCTGGCGCGGAAGGAGGGATCCAGTTCAATGGCATAGATGCCAACAATTTCGGCACTCCTCGCACAATTGCCACGGGCCTGTCGCCTGCTGATGTGGAGGATGAGGAAGATGTGGAGGATTTGGAGGATGAGGAGGATGTGGAGGATGAGGAGGATGTGGAGGATGAGGAGGATGTGGAGGATGAGGAGGATGTGGAGGATGAGGAGGATGTGGAGAATGAGGAGGATGTGGAGGATGAGGAGGATGTGGAGGATGTGGAGGATGAGGAGGATGTGGAGGATGAGGAGGATGTGGAGGATGAGGAGGATGAGGAGGATGTGGAGGATGAGGAGGATGTGGAGGATGAGGAGGATCTTTCGTCGTCCGCGCAATGGTCGACCGCGATATGCGACCAATGCATCGATACGCTTCGCAGCTCTGTGGACTTCAGACGGCAGGTGTTGCGTGTCGAGCAGCAACTGTTGGAGAGGACTAAAGCATTAGAAGATGGTATAGTCGAAGTGAAAACGGAGCCCTTGGACGTGAATGGCGGAGAAGATTCCGACGATTACTTTCTGCCTTGCACCGAAGTGAAGATTAAGAAGGAACCGAAGCCAGATATAAAGAAGCGTCACAGAAGTGTGAGGGAGAAGTGTGTCGGCGTGAATCCCGAGTGGGAGGGAGATGACACCAACATTCCAACAAACAATCGGGTCGACGCCAAAGACAAGGAAAAGAGCATGAAAAGGATCAAGAGGAGAACAGTTACTATTGAAAGGTCAAAAGTTAAACTCCAATGGACCAGAACAGCTATAGCTGACAAGATGAAGCACCGGGAGAACTTGCTTACGGTCTTGAAGTATTCGAACGCGACACCCTTCAAGAAGAAGTCGTTGGTCGGCTTTAGTTGCGCGTATTGCGAGGGGGCGTACCCCGACCCGGGCGAGCTGCGGCGCCACACCCGCGCCGAGCATGCCGCCCAGCGCCTGGAGCTCCGACCCGCGCGCGACCTCTCCCAGTACTACGTCAATCTGGACGTGGACAACCTCGCCTGCACGCTCTGCGAGAAAACCCTCGACAACCTAACTACCCTCAAGGAGCACCTGACTAAAACCCACCAGAAAACCTTCCACGCGGACATCAAGGACCACATCCTCGAGTTTAAGCTGAAGAGCGGCGACGTTTTCGACTGCGCCAAGTGCGCGTCCACGTACGAGACGTTCAAGATGCTGAAGCAGCACATGAACAAGCACTACAGCAACTACGTGTGCGGGAAGTGCGGGACCGCGTTCGCGACCAAGAGGTCCCTGCACTCGCACCGGAACGTGCACAAGGAGGGCAGCTACAAGTGCGGCTACTGCGACAAGGTGTTCTCGAACCGTCCCAAGAAGTGCTACCACGAGAAGCTGCAGCATCTGGGCGAGAGCAACATCTCGAAGTGCCAGCACTGCGGTGCGCCCTTCAAGAGCTACTACCAGCGGAACCAGCACCTGATCCGGGTGCACAACGACGAGGCCAAGTACAAGTGCAACGTCTGCAACAAGAGCTATCTGCTCAAATCGCTGCTCATGTACCACATAAAGAGGAATCACTTGCTGGAGAGGAACTGCCAGTGCACGGAGTGCGGCTACCGGTTCTTCAGCAAGAAGGCTCTGAAGGCGCACATGGTCCGGCACACGGGCGAGCGGATATACGCGTGCGAGGTCTGCGGCAAGGCGTACGCCAGGAAGTACACCCTGAGGGAGCACATGCGCATCCACAACAACGACCGGCGGTTCAAGTGCCACGTGTGCAGCCTGACCTTCGTGCAGAAGTGCAGCTTGAAGAGTCATCTGCTGTCGAACCACGGGATCAGCGTGGCGGCCTGCGAGATCACCATGACGACAAATTGA
Protein
MELSAASLLTQLMIRVSTRLLSHITIKQHICWSDSTIVLAWLNPPPHRLQVFEANRVAKITSNPITSTWKHVPTNLNPADCASRGMSAQSLSAHDLWWSPSWLKEPPDTWPKMPPALGHHALPGLKPKKVPAHIAVPDLDLDLLTRFSSLDKLVGVTACIKRFIFNCRHNSTDRRSGPLTVGERRDALLFWVRSVQHNEFAEDIYRLQAGKICTVRLQRLSPLMKDDLLRVGGRLTHAPIRYDAQHPLVLPSSSPLVDLIIDHYHRINCHPGANTLHAILRQQFWILSARRVIRHRVYKCIRCFRYRAQARAPLMADLPADRVTPQPLIQALSQRFWTLWTKSYLHTLQTRSKWLSTSSPPQVGELVLIKEDNQPPLQWKLGRIIRTLPGKDGVIRVVDLDTKHGSLRRPVFNGRAVGDRVYPEAHAGDFRTLGPTGLPDVCSATTTSRAYTKYENYFVCPGLSSKPGAEGGIQFNGIDANNFGTPRTIATGLSPADVEDEEDVEDLEDEEDVEDEEDVEDEEDVEDEEDVEDEEDVENEEDVEDEEDVEDVEDEEDVEDEEDVEDEEDEEDVEDEEDVEDEEDLSSSAQWSTAICDQCIDTLRSSVDFRRQVLRVEQQLLERTKALEDGIVEVKTEPLDVNGGEDSDDYFLPCTEVKIKKEPKPDIKKRHRSVREKCVGVNPEWEGDDTNIPTNNRVDAKDKEKSMKRIKRRTVTIERSKVKLQWTRTAIADKMKHRENLLTVLKYSNATPFKKKSLVGFSCAYCEGAYPDPGELRRHTRAEHAAQRLELRPARDLSQYYVNLDVDNLACTLCEKTLDNLTTLKEHLTKTHQKTFHADIKDHILEFKLKSGDVFDCAKCASTYETFKMLKQHMNKHYSNYVCGKCGTAFATKRSLHSHRNVHKEGSYKCGYCDKVFSNRPKKCYHEKLQHLGESNISKCQHCGAPFKSYYQRNQHLIRVHNDEAKYKCNVCNKSYLLKSLLMYHIKRNHLLERNCQCTECGYRFFSKKALKAHMVRHTGERIYACEVCGKAYARKYTLREHMRIHNNDRRFKCHVCSLTFVQKCSLKSHLLSNHGISVAACEITMTTN

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5V3J     E-value=1.39946e-24,     Score=284

Ontologies

KEGG
101747075    no KO assigned | (RefSeq) zinc finger protein 260-like
GO
GO:0046872   GO:0005634   GO:0008270   GO:0003676   GO:0003677   GO:0006101   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Topology

Length:
1089
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02231
Exp number, first 60 AAs:
0.02212
Total prob of N-in:
0.00097
outside
1  -  1089
 
 

Population Genetic Test Statistics

Pi
243.209859
Theta
170.84128
Tajima's D
0.885799
CLR
0.178537
CSRT
0.624568771561422
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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