SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14119
Pre Gene Modal
BGIBMGA011195
Annotation
PREDICTED:_uncharacterized_protein_LOC106124521_[Papilio_xuthus]
Location
Bomo_Chr23(-):18243636-18251691      View in EpiBrowser
Transcription factor
zf-C2H2
Location in the cell
Nuclear   Reliability : 4.882
 

Sequence

CDS
ATGGCATCTAATAATACGGATGAAACTCGAAATTCCGACGGCTCCTCGGATGATGAGTGTTTATCTGAAGTAAAGAGAAAAGTTGATCTCGCCAGATCTAAGAGTGGTGACGATAGCGATTATGAGCCTATAATATCTGAGATAATGGTCTCAACAGAAGTAGACGAGTATGACGAAGAGCCACTCGATTTTAGCATTAAGAAGGAAGACAAACCGGCAACATCAAAACGGAGGAGAAATGACAAATGTAGAAAGAGCAAAGAGAAAAAACCTAAAGTGTATGGATGTAATCTGTGCAGTGCCCAATATAAAAATGCACAGGAATTGAGAGCACATTCATTAGAGCATCAAGTCAAAACAAGGCACAAATGTGACGAGTGCGGGAGATATTTCAAAAAAGCCTTCAGTTTACGTCTGCATCAAAAAATACATACAACAATGGAATTTGACTGTCGATTGTGCGATATGAAGTTCACGTCGAAAGGGCATTTGTTTAGACATTTGAGGTCACATGAGAAGACCGAACACTGTGATGTATGTCCGGCTAAATATCATTCGAGGATACAGCTGAATCGACACAGGAGACTGCATACACTCCATGGAATGTGTACACAAACTGCTGATGAAACTGCTCGAGACACTACAAATAAATCCGATCAGTTAATTCCTTCGGCCCCGGACATTGAATATCAAAACACGAGCTGCCCTACCGAATACTCTGAGGACTCGACAGATCTCAACAGTGAGGCCAAAAACTTGAACTGCACCCGGAAGGAGGACCTCCCGGAAAACATACAATGCGCTATCGTTAGCAAGCTGTACAAAGGACGGACTGTCACCGATATATGTCAGATATACAATCTGACCCCGGATGTAGTGAACAAGGTTTGGGAGGAAAGGGACACGTTTAGCGCCCTTAAGAAAGCGGGAAGGAGAAGCAAGATGTATATGAATAGCATACTAGATGCAAGAATACTGGATTGGTACAGGGATCAGAAATCGAATAAGGTGCAAGTGTCTGGTAAAATGTTGCAAGATATAGCTGAGTTGTTCGCCAAAGAAAATGGTTTTATCGCGTTCGACGGCAGCAGGAAGTGGCTGGACGGCTTCAAGAAGAAATACAGCATATCGTTGAGGGGAGTACCCGTCAAGAGAGAATTTAGCATAGGACCAGAATCGAAATGGAAGAAGACTTTCTTCAAGGAGCAGTGGTGCGACGCTAGGCTTGGTGTTAAAGACGAGGACATTTACACGGCTGATGAGGTCGGAATTTATTATAATCCTTCGAAGGGCCGGGTTAAGAAACCTGCAGGCAAGAAATTCATTCAAGGCTACGTCGAGGACAGATTGGCGATATTCATGTGTGTGAACGCGACGGGCACTGACAGAAAGAAGCTCCTGGTGTGTGGTTCTGATGATCCTCTGCTGCATTCGTATAGGGATGCCGATACTTTGCCCGTCACGTACATAAGGCACGCCAATGCGCATTTCACAACGCAAATGTTCGAAGGCTTCGTTAAATACTGGAATAAAGAGCTTCAAATGAACAACAGGAGAGCCATTCTGGTCCTAGACAGAGCCACTGTGCACACCAAACTTCAGCTCTCCAATCTGAAACTCGTCTTCGTACCGTGGAAGGCTTATAACGGCTTAATACCGGTGAGGAATGGAATTTTTAATCGTTTCAAAGATGAATTCAGGCGGCTGTTCATAACTGAGAAGGCCATGAATGTTGTCCGTGGAGTAGACAGGAGGACCACCAGCCTGGAAGCTCTGTACATGATAATGAAAGCATGGGAACGGACTCCTAATTGTGCTATATCGAGAAGCTTTGTCAATCTAGGCTTTGACGTTCAAGAACGAAACGTTGAGGAGAATTTGACGCCTAAAGTATGTGAAAACGATGAGGAAATTATGTGTAAACTGTTGAGGGATTACGATGTGGACACATATTACACTGAGCTGCCTAGTTTGGACAACTTTTTGAACGTGGACGAGGAGCTACTGACCGGCCAGGGAACGAATTGTTCGGTTTTCGGTGGGAACCATAAAATCCAGGACCCAGCAGCAGTCGAAAGAGAACGAGAAGAGATACTGGCTATCGGTACAAAGAAACCGGAGTGCAGTGAAATAGAAGAGAGGGTTACAAAGATTAGGGCCCTCCAAGATTTAGATATAGTTAGAAAGTATTTACAAACCAGCAATACGAGTTATGATGTGTACAAAAAATTTATGGATATAGAGAAATATGTGTTGAGAGAACCTATGAATCGAGTCGCCGAAGAGAAGAAAGTAACTGGAAAAAGCAAACTCGACATGTAA
Protein
MASNNTDETRNSDGSSDDECLSEVKRKVDLARSKSGDDSDYEPIISEIMVSTEVDEYDEEPLDFSIKKEDKPATSKRRRNDKCRKSKEKKPKVYGCNLCSAQYKNAQELRAHSLEHQVKTRHKCDECGRYFKKAFSLRLHQKIHTTMEFDCRLCDMKFTSKGHLFRHLRSHEKTEHCDVCPAKYHSRIQLNRHRRLHTLHGMCTQTADETARDTTNKSDQLIPSAPDIEYQNTSCPTEYSEDSTDLNSEAKNLNCTRKEDLPENIQCAIVSKLYKGRTVTDICQIYNLTPDVVNKVWEERDTFSALKKAGRRSKMYMNSILDARILDWYRDQKSNKVQVSGKMLQDIAELFAKENGFIAFDGSRKWLDGFKKKYSISLRGVPVKREFSIGPESKWKKTFFKEQWCDARLGVKDEDIYTADEVGIYYNPSKGRVKKPAGKKFIQGYVEDRLAIFMCVNATGTDRKKLLVCGSDDPLLHSYRDADTLPVTYIRHANAHFTTQMFEGFVKYWNKELQMNNRRAILVLDRATVHTKLQLSNLKLVFVPWKAYNGLIPVRNGIFNRFKDEFRRLFITEKAMNVVRGVDRRTTSLEALYMIMKAWERTPNCAISRSFVNLGFDVQERNVEENLTPKVCENDEEIMCKLLRDYDVDTYYTELPSLDNFLNVDEELLTGQGTNCSVFGGNHKIQDPAAVEREREEILAIGTKKPECSEIEERVTKIRALQDLDIVRKYLQTSNTSYDVYKKFMDIEKYVLREPMNRVAEEKKVTGKSKLDM

Summary

Uniprot
H9JNU1   A0A2A4J7S4   A0A2H1V6B9   A0A194PU10   A0A194RP71   A0A1Y1KNY0   + More
Pubmed
19121390    26354079    28004739   
EMBL
BABH01009920    NWSH01002840    PCG67453.1    ODYU01000658    SOQ35814.1    KQ459593    + More
KPI96244.1    KQ459875    KPJ19643.1    GEZM01080219    GEZM01080218    JAV62288.1   
Proteomes
UP000005204    UP000218220    UP000053268    UP000053240   
PRIDE
H9JNU1   
Pfam
PF03184   DDE_1        + More
PF03221   HTH_Tnp_Tc5
PF00096   zf-C2H2
PF04218   CENP-B_N
Interpro
IPR009057   Homeobox-like_sf        + More
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR004875   DDE_SF_endonuclease_dom       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR007889   HTH_Psq       
SUPFAM
SSF46689   SSF46689        + More
SSF57667   SSF57667       
ProteinModelPortal
H9JNU1   A0A2A4J7S4   A0A2H1V6B9   A0A194PU10   A0A194RP71   A0A1Y1KNY0   + More
PDB
5EI9     E-value=2.39601e-11,     Score=169

Ontologies

KEGG
101740559    no KO assigned | (RefSeq) tigger transposable element-derived protein 4-like
GO
GO:0003677   GO:0003676   GO:0046872   GO:0042626   GO:0016887   GO:0019829   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Topology

Length:
773
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00925
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00052
outside
1  -  773
 
 

Population Genetic Test Statistics

Pi
268.256746
Theta
201.656816
Tajima's D
0.747666
CLR
0
CSRT
0.589670516474176
Interpretation
Uncertain
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