Gene

KWMTBOMO13808

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr23(-):9798403-9801720      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.948 Nuclear   Reliability : 1.26

CDS

ATGGCTAGCCAGGAGCTGCGCATCATTTATTGGAACCCCGACGGGATAAAGTCCCGAAAGAACGACCTGCTTGTTCTCGCCCGGGAGTACAACCCAGAGGTTCTGCTCCTGGGCGAGACCTTGTTAAAACCTCAGGATGTGTTCAGGATTCCCAACTATTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTTGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCTCATCGACAAGGTCAGTCGGTGTGAGGGTACACACCTCGGGGGGAGATATGCGGATTTATGCCGCGTATAGACCCCCGGGGCCTGAATTCCACCCTGAGGATATAAGACGGGCCCTGAATTACGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGTTCCCGACTTAACACAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCTGATGAACCCACGCACGTCCCGACCGCCGCGCGATACCAGCCCGATGTGCTGGACGTGTGTGTTCATAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGTACGACCTGGGTACCCCACATCTCCCTGTCCTGGTGACACTGGGAATGGGGCTCACCCGGGTTGCGACTTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGACTAGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGAGGGGGTCGATGACGCGGCAGTCCGCCTTATCGACTCCATCAGGGGAGCGATTGACCAGGCGACGACTCTTGTGCCCAGCGGCGGACCCAGAGGTAGACTCCCGGCCCATCTGAAGGCGATCATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGTTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTTTCGGGGCTATGCGTGGGAGGAACGGATTGAGGAGGCCCGTGAGGACCCCTCTTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGCAATGCTGGAGCGGCAGTTCGTTCCGAATGACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCGAACCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGATGTTTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGTGAGGACGGTATTCCCTCCCTCGCATTCTTCCATTTCCCTGAAACGGTCGTGTCATATATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGATAGGAGAATTCCCTCCAGTTACCGTCCGATCACCTTGCTGTCGCATGTGGGCAAGTTGTTCGAGAGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCCCAGACCCGAGCAGTTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTCATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGTTGGTGCAGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCTTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCTCGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCTCCATTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTCGAGGGTAACCTCCAAGCGTGGGAAGTAGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCATCCAACGTCCCCTCTGCGGCCATTCTGAGGATGCAGAGGCTTTTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCGGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAATAAGGCGTTGGCGGCCGCTCGCTGTGCGAGATTCCTCCTCCGGCCGGTGTTGGCCTCTAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGAGGCCTGGTATCACCTCATCCCGCAGGGTATGCGGGCGAGGTTACAGGTCCAGCAAAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTGGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCACCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG

Protein

MASQELRIIYWNPDGIKSRKNDLLVLAREYNPEVLLLGETLLKPQDVFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFSSTRSVGVRVHTSGGDMRIYAAYRPPGPEFHPEDIRRALNYDSRPALLVGDLNAKHVAWGSRLNTAVGRRLLEDADRGDYSVVGPDEPTHVPTAARYQPDVLDVCVHKGLRCPVTIEALYDLGTPHLPVLVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPEGVDDAAVRLIDSIRGAIDQATTLVPSGGPRGRLPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSFRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAAMLERQFVPNDSAPSEAAFHQSVEESVANLLSSPVPPLGDDVFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRIPSSYRPITLLSHVGKLFERLLLRRVSPHILPRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIHKLVQNTDLQHAYVRLLGSYLEGRSFFVAVEGAKSSVRPVSAGVPQGSVLAPFLYALYTNDIPTLEGNLQAWEVDVKLALFADDSAYFSSSNVPSAAILRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHANKALAAARCARFLLRPVLASRLPVRTKLGIYKTYVRSRITYAAEAWYHLIPQGMRARLQVQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNIAPLHARPPDGRALPRELLEPPAMVR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A3S2NJ07   A0A2A4JQF8   X1WNI2   J9LFC9   X1WZH0   A0A1Y1NA23   + More
J9LC21   A0A2J7QY69   A0A2J7PBY3   A0A224X6Q4   A0A2J7QR37   V5GNJ2   A0A2J7PU96   X1WLB2   A0A2J7Q6J2   A0A2S2NJB5   A0A224XB44   J9KPF1   A0A023EYS8   A0A2J7R4U3   V5GNF3   A0A2J7PDM0   A0A0A9YJ00   A0A2J7QB68   A0A2J7RE85   A0A0A9YU04   A0A2M4CV52   J9JS95   A0A2J7R098   A0A069DZL8   A0A2J7R7D0   A0A2J7Q9Z1   A0A139W8G9   A0A2J7QES2   A0A2J7PMN4   A0A2J7PSM7   A0A2J7RQ52   A0A2S2NGV8   A0A2H8TF37   A0A224X6T4   A0A2J7PVX3   A0A2M4CV42   A0A2S2Q383   A0A087UCW3   A0A224XIB0   A0A069DX78   A0A224XJI0   A0A2S2R9D4   J9LF86   A0A2A4K918   A0A023F0I3   Q04135   A0A224XHW8   A0A2S2PPK8   Q6R811   A0A2S2NPG3   A0A023F069   X1XGU0   Q9BPQ0   A0A1Y1K0C8   A0A1Y1KFR3   Q961V7   A0A2A4IUM2   J9KCZ4   A0A224X6U5   X1WXR6   Q9XXW0   A0A1Y1LKN6   O96546   P21328   A0A139WA11   X1WN18   A0A1B6EGD8   A0A224X6R6   A0A2S2QEE0   A0A2S2N814   A0A2S2P698   A0A0N1PFV1   K7IN67   A0A2S2NH02   A0A2M4BD67   A0A2M4BD83   A0A142LX53   A0A224XF24   A0A2M4BDV6   A0A0V0G5B6   A0A224X7Z3   A0A224X6S1   A0A1Y1KUU7   A0A2S2P6S3   A0A224X6W2   A0A0J7K7J8   Q93137   A0A2J7PP17   A0A2S2PHL7   A0A087U3K8   A0A2S2N6Q7   A0A0J7MTN6   A0A087UGF5   A0A224X746  

EC Number

2.7.7.49

Pubmed

28004739    25474469    25401762    26334808    18362917    19820115    + More
1705654    14745026    10333566    10380107    2463954    3040362    1714378    26354079    20075255    25527032   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02008153    ABLF02008462    + More
ABLF02008464    ABLF02023911    ABLF02034467    GEZM01008457    JAV94772.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    GFTR01008279    JAW08147.1    NEVH01011985    PNF31054.1    GALX01005299    JAB63167.1    NEVH01021205    PNF19912.1    ABLF02042518    ABLF02057746    NEVH01017470    PNF24199.1    GGMR01004661    MBY17280.1    GFTR01008262    JAW08164.1    ABLF02041767    GBBI01004395    JAC14317.1    NEVH01007402    PNF35856.1    GALX01005359    JAB63107.1    NEVH01026386    PNF14434.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01016302    PNF25823.1    NEVH01005277    PNF39135.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GGFL01004957    MBW69135.1    ABLF02028535    ABLF02028545    NEVH01008277    PNF34262.1    GBGD01000415    JAC88474.1    NEVH01006736    PNF36716.1    NEVH01016340    PNF25410.1    KQ973342    KXZ75569.1    NEVH01015305    PNF27092.1    NEVH01023979    PNF17579.1    NEVH01021925    PNF19341.1    NEVH01001347    PNF42959.1    GGMR01003407    MBY16026.1    GFXV01000908    MBW12713.1    GFTR01008261    JAW08165.1    NEVH01020940    PNF20481.1    GGFL01005012    MBW69190.1    GGMS01002992    MBY72195.1    KK119261    KFM75202.1    GFTR01008246    JAW08180.1    GBGD01000389    JAC88500.1    GFTR01008257    JAW08169.1    GGMS01017365    MBY86568.1    ABLF02017815    NWSH01000032    PCG80496.1    GBBI01003747    JAC14965.1    X17551    CAA35587.1    GFTR01008254    JAW08172.1    GGMR01018716    MBY31335.1    AY508487    AAS13459.1    GGMR01006408    MBY19027.1    GBBI01003810    JAC14902.1    ABLF02055645    AB055391    BAB21761.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GEZM01084969    JAV60363.1    AY047531    AAK77263.1    NWSH01007753    PCG62823.1    ABLF02008463    GFTR01008251    JAW08175.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    AB018558    BAA76304.1    GEZM01053022    JAV74219.1    AF081103    AAC72921.1    M22874    M38643    KQ971729    KYB24751.1    ABLF02021177    ABLF02027367    ABLF02066338    GEDC01000337    JAS36961.1    GFTR01008269    JAW08157.1    GGMS01006359    MBY75562.1    GGMR01000676    MBY13295.1    GGMR01012305    MBY24924.1    KQ459265    KPJ02064.1    GGMR01003864    MBY16483.1    GGFJ01001858    MBW50999.1    GGFJ01001822    MBW50963.1    KU543687    AMS38379.1    GFTR01008038    JAW08388.1    GGFJ01001857    MBW50998.1    GECL01003538    JAP02586.1    GFTR01007929    JAW08497.1    GFTR01008271    JAW08155.1    GEZM01074951    JAV64378.1    GGMR01012443    MBY25062.1    GFTR01008260    JAW08166.1    LBMM01012041    KMQ86458.1    U07847    AAA17752.1    NEVH01023280    PNF18085.1    GGMR01016296    MBY28915.1    KK118005    KFM71947.1    GGMR01000226    MBY12845.1    LBMM01018163    KMQ83860.1    KK119692    KFM76444.1    GFTR01008151    JAW08275.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000235965    UP000007266    UP000054359    + More
UP000053268    UP000002358    UP000036403   

PRIDE

Q04135    Q9BPQ0    Q961V7    Q9XXW0    P21328    Q93137    + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   X1WNI2   J9LFC9   X1WZH0   A0A1Y1NA23   + More
J9LC21   A0A2J7QY69   A0A2J7PBY3   A0A224X6Q4   A0A2J7QR37   V5GNJ2   A0A2J7PU96   X1WLB2   A0A2J7Q6J2   A0A2S2NJB5   A0A224XB44   J9KPF1   A0A023EYS8   A0A2J7R4U3   V5GNF3   A0A2J7PDM0   A0A0A9YJ00   A0A2J7QB68   A0A2J7RE85   A0A0A9YU04   A0A2M4CV52   J9JS95   A0A2J7R098   A0A069DZL8   A0A2J7R7D0   A0A2J7Q9Z1   A0A139W8G9   A0A2J7QES2   A0A2J7PMN4   A0A2J7PSM7   A0A2J7RQ52   A0A2S2NGV8   A0A2H8TF37   A0A224X6T4   A0A2J7PVX3   A0A2M4CV42   A0A2S2Q383   A0A087UCW3   A0A224XIB0   A0A069DX78   A0A224XJI0   A0A2S2R9D4   J9LF86   A0A2A4K918   A0A023F0I3   Q04135   A0A224XHW8   A0A2S2PPK8   Q6R811   A0A2S2NPG3   A0A023F069   X1XGU0   Q9BPQ0   A0A1Y1K0C8   A0A1Y1KFR3   Q961V7   A0A2A4IUM2   J9KCZ4   A0A224X6U5   X1WXR6   Q9XXW0   A0A1Y1LKN6   O96546   P21328   A0A139WA11   X1WN18   A0A1B6EGD8   A0A224X6R6   A0A2S2QEE0   A0A2S2N814   A0A2S2P698   A0A0N1PFV1   K7IN67   A0A2S2NH02   A0A2M4BD67   A0A2M4BD83   A0A142LX53   A0A224XF24   A0A2M4BDV6   A0A0V0G5B6   A0A224X7Z3   A0A224X6S1   A0A1Y1KUU7   A0A2S2P6S3   A0A224X6W2   A0A0J7K7J8   Q93137   A0A2J7PP17   A0A2S2PHL7   A0A087U3K8   A0A2S2N6Q7   A0A0J7MTN6   A0A087UGF5   A0A224X746  

PDB

6AR3     E-value=5.10109e-05,     Score=115

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0004519  

Length:

908

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00969999999999995

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00030

outside

1  -  908

 

 

Pi

2.423226

Theta

164.265077

Tajima's D

-0.760474

CLR

20.943398

CSRT

0.187640617969102

Interpretation

Uncertain