Silkworm Genome Informatics Database

Gene

KWMTBOMO13731

Pre Gene Modal

BGIBMGA011498

Annotation

PREDICTED:_early_growth_response_protein_3_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr23(-):7744858-7748454 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.862

CDS

ATGGGCACGGATACCGAGCCCCCGGTCGGTCCGCACCTACTCTCCCTGGCCGACGTCGGTACTCTCGGTTTTGATTGTGCATTAAAACCGACAGCGGTTCCATCATCAGGCAATACGACGTCAGACCTCAACACTCCAGTGACAACATCGGATCTGCCCGCTTTTTTCCCGAATCTACTGGAACCGCCGCCAATATCAGGCAGCCTACCAGGCGATGAATTATCATTGGGATGCTCCCCGCGGCGACATAAGCACGAGTCGTCCTTGTCGCCGGGAGCACGTGCTGAAGATGCAAGCAATGCATCCAGCGCAAGTGCCTCCCTATACGGACCCCCTTCTTCCAGCACAGGGAAACGGGCGCCATCGCCACCTTTACAGTGGCTTTTACCACCAGGCCCCGGGCCTGGTAGTGTTGACAAATACTTTCAACAAGAATACGAAGAGCGTGTTGAATTACTTCCCCCAGAGTGTCAAGCATATTGTCCACCGCAACAAACTTGCCCTTCTGCACAACATTGTGAATATAGACCGCCACCACAACCGTCGCAGCAACAACACACGTGGGAACCGCAAGAGTACGCGAGCGCACCGCAACCAACTCCGGGGCCTTCCGGTTTGCCAAAACGCGAGCCCTATCCAAGCCCAGCTGTTCCGAGCGACAGGCCCGTTCAGCTTGCAGAATATAACCCATCCACAAGTAAAGGTCACGAGATCCTATCACAAGTTTATCAACAAAGTGCGCAGCCACTTCGGCTCGTTGCTGTTAAACCACGCAAATATCCTAATCGCCCTAGCAAAACGCCCGTCCACGAACGCCCCTATGCCTGTCCAGTAGATGGGTGCGATCGCAGGTTTTCTCGATCAGACGAACTGACACGGCACATTCGTATTCACACAGGTCAAAAACCATTTCAATGCCGTATTTGTATGCGCTCGTTCAGTCGATCAGATCATTTGACAACGCACGTACGGACACACACTGGAGAAAAGCCATTCGCATGCGATGTCTGTGGTCGTAAATTCGCACGTTCCGATGAAAAGAAAAGGCACGCAAAAGTACACCTTAAACAACGCCTGAAGCGGGAGCGAGGCGGAGGCGGACCAGCTCACCATCACGAGCCTCATCCGCACGCGCCGCTCTAG

Protein

MGTDTEPPVGPHLLSLADVGTLGFDCALKPTAVPSSGNTTSDLNTPVTTSDLPAFFPNLLEPPPISGSLPGDELSLGCSPRRHKHESSLSPGARAEDASNASSASASLYGPPSSSTGKRAPSPPLQWLLPPGPGPGSVDKYFQQEYEERVELLPPECQAYCPPQQTCPSAQHCEYRPPPQPSQQQHTWEPQEYASAPQPTPGPSGLPKREPYPSPAVPSDRPVQLAEYNPSTSKGHEILSQVYQQSAQPLRLVAVKPRKYPNRPSKTPVHERPYACPVDGCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHVRTHTGEKPFACDVCGRKFARSDEKKRHAKVHLKQRLKRERGGGGPAHHHEPHPHAPL

Uniprot

H9JPP3 A0A2H1X2U1 A0A2A4J864 A0A212FJM6 A0A194RUI1 A0A194PL31 + More
A0A3S2NP46

Pubmed

19121390 22118469 26354079

EMBL

BABH01015157 ODYU01013027 SOQ59643.1 NWSH01002449 PCG68275.1 AGBW02008253 + More
OWR53934.1 KQ459833 KPJ19796.1 KQ459601 KPI94037.1 RSAL01000184 RVE44833.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053240 UP000053268 UP000283053 + More

PRIDE

H9JPP3

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JPP3 A0A2H1X2U1 A0A2A4J864 A0A212FJM6 A0A194RUI1 A0A194PL31 + More
A0A3S2NP46

PDB

1AAY E-value=9.14925e-41, Score=419

KEGG

101743140 no KO assigned | (RefSeq) early growth response protein 3

GO

GO:0003676 GO:0046872 GO:0031625 GO:0005515 GO:0000287 GO:0016620 GO:0016787 GO:0016491 GO:0015930

Length:

380

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00147

Exp number, first 60 AAs:

0.00147

Total prob of N-in:

0.00329

outside

1 - 380

Pi

244.37639

Theta

203.422862

Tajima's D

0.87629

CLR

0.529154

CSRT

0.619519024048798

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics