SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13404
Pre Gene Modal
BGIBMGA010850
Annotation
PREDICTED:_zinc_finger_and_BTB_domain-containing_protein_17-like_isoform_X3_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.094
 

Sequence

CDS
ATGATATATGAACGTTTCTTTTGGACAGGCGAAACGACAGTCTCAAATGAAATATTGGACACCGTTCTGAAAGCTGGTGAGGTGCTCAAGATCCGCGGGCTGTGGCGTCAGACCGACGAGGGCGGCGCCTCCACGGAGCCCCCAGACAAGAGCACATTCAACCAGACCCTGCCATCGGCGAGCGTGAACAAGCAAATCGTGACCAAGAAGCCTGACGAGGGACAGGCCAAGATAGCCGTGAAGAAAGATGATAAGCTCTTGAAAACCTTCACACCAGTTCAAGGCGCAGGACAGGGAATAACCAGACCAATGTTCATCGGTCCCCCAAAGCTGGTGTTCATTAAGACCACCGAAGGCGGGACCCAAGCCGCCTTACGTCCCTGCGCACCGAAGGGTCAGACCATACTAGTCGCGCCGGCACCCACGTCTGACGCCCCCACCCTCACCACAATGACCGCCACTGCAGCAACGAGCACGGCCAACCCAGTAGCGGAGGCGTCCGAAGACAGTCCACCACCAAGGATACTGAGGAGGCATGTCACGGAAAAGAAATACGGAAAAAGGCAGAAGACTGAACGAAATACGGAAGAAGATGCCAAGGATAACGATGACGGAGGAAACGCTGATAATGTATCTGAATGCTCAAAGAAATCAAATCAAAGCGCTCAAGAAACGACGACAACTGAAATTCAGATAAAAGATGAACCGGAATGGGACGCGAGCAGCATCGAGGAGGAGGAGCGCTCCATCGCGGAGATGTTCCAGGCCGAGATGAACGTGAAGTCGGAGCCCGTCGACGACGTGGACATCGAGGACGACAGCCTGGTGTACAGTCCGCTGGCGTGCGAGCTGTGCGCGGAGGTGTTCACGGTGCCGGCCGCCTGGGTGCGACACGTGCAGGGGCACGCGCACGACCAGCCGCGCCCGCCCCGCGCCCCGGGCGACGAGGGTGAGGAGACAATGGCCTTGCTGCGTTGCGACTTGTGCCAGAAGCACTTCCCGAACCCAGCGCAGTGGGTGCGGCACATACAGAGCACCCACACCGAAACAGAGGGCGCGCAAAACAAGACATGTGCACATTGCAAGAAGACGTTCCCGTCACACGCGTCCATGCTCATACACATGCGCACGCACACAGGGGAGCGGCCGTTCGTGTGCGGACTGTGCAACAAAGGCTTCAACGTGAAATCGAACCTGCTCCGGCACCTGCGCACTCTGCACGAGGCGGCCGACGAGACCGGCGTCGCGCCCGCCAAGCGCGAGCCATGA
Protein
MIYERFFWTGETTVSNEILDTVLKAGEVLKIRGLWRQTDEGGASTEPPDKSTFNQTLPSASVNKQIVTKKPDEGQAKIAVKKDDKLLKTFTPVQGAGQGITRPMFIGPPKLVFIKTTEGGTQAALRPCAPKGQTILVAPAPTSDAPTLTTMTATAATSTANPVAEASEDSPPPRILRRHVTEKKYGKRQKTERNTEEDAKDNDDGGNADNVSECSKKSNQSAQETTTTEIQIKDEPEWDASSIEEEERSIAEMFQAEMNVKSEPVDDVDIEDDSLVYSPLACELCAEVFTVPAAWVRHVQGHAHDQPRPPRAPGDEGEETMALLRCDLCQKHFPNPAQWVRHIQSTHTETEGAQNKTCAHCKKTFPSHASMLIHMRTHTGERPFVCGLCNKGFNVKSNLLRHLRTLHEAADETGVAPAKREP

Summary

Pfam
PF00651   BTB        + More
PF00096   zf-C2H2
Interpro
IPR000210   BTB/POZ_dom        + More
IPR011333   SKP1/BTB/POZ_sf       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57667   SSF57667        + More
SSF54695   SSF54695       
PDB
5EI9     E-value=1.95544e-13,     Score=184

Ontologies

Topology

Length:
422
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00122
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00371
outside
1  -  422
 
 

Population Genetic Test Statistics

Pi
4.264208
Theta
15.433289
Tajima's D
-1.215641
CLR
10.950185
CSRT
0.0992450377481126
Interpretation
Uncertain
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