HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	3.1	1.7	2.5	1.5e+02	5	23	79	98
2	12.9	0.2	0.0018	0.11	3	23	134	155
3	26.9	0.3	6.8e-08	4e-06	1	23	161	183
4	22.5	0.3	1.7e-06	0.0001	1	23	189	211
5	27.1	5.3	5.8e-08	3.5e-06	1	23	217	239
6	19.6	4.1	1.4e-05	0.00082	1	23	245	267

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 2.5
                   TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  5 dCgksFkrksnLkrHirt.H 23
                    C + F +  ++ rH+r  H
  KWMTBOMO00519 79 LCRQIFFDCCDYSRHYREeH 98
                   6999*************988 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.0018
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C +Cg++F+++ +++ H r  H
  KWMTBOMO00519 134 CRICGETFSDNASYVEHNRFvH 155
                    9****************88777 PP

  == domain 3  score: 26.9 bits;  conditional E-value: 6.8e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp+C k+F+++  L++H+r+H
  KWMTBOMO00519 161 YQCPICAKRFTQQGGLQQHMRMH 183
                    9*********************9 PP

  == domain 4  score: 22.5 bits;  conditional E-value: 1.7e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+k F++k  L +H+rtH
  KWMTBOMO00519 189 FACTYCPKAFTQKAGLDQHLRTH 211
                    78********************9 PP

  == domain 5  score: 27.1 bits;  conditional E-value: 5.8e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +Cgk+F+++ +L++H+rtH
  KWMTBOMO00519 217 FRCVICGKCFSQSVHLRQHMRTH 239
                    89********************9 PP

  == domain 6  score: 19.6 bits;  conditional E-value: 1.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +Cgk+Fk+ s+L+ H+r+H
  KWMTBOMO00519 245 FECVYCGKRFKQTSHLNFHLRSH 267
                    89********************9 PP