SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO13376
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Location
Bomo_Chr22(-):15691004-15696831      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.34
 

Sequence

CDS
ATGCCTGGTGGGGCCTCGTCTCCGCCCATAATCAGCACTCCCGGCCCATCCCGTAAGGGACGTAAAGCGGCGGCAGTCATTTTTGCCCACCGCCCTTCATTCATTCCTGTCCCAGGTCGTATGGACCCTGATCCGGCAAACGGGCCTGGACCTTCTTCGGAGGCCCGGGGATCGCTCGGGATCCCTCGGCCTCGGAGGAAGGCCAGGTCCGGGTCGGACCAGGGTTCATCTGGGGCGGGCGATAAGCGCCCTAGGATTGGACCGTCACCACGGTCCAAGGAAGAGAGTGGCAGCGACGAGTACTCCTCCCCTGCCACATCATCATCATCATCCTCTTCTCCTTCATCCAGCGGCAGCCCTTCACCCTCCCCTCCTGCCAAACCGATACCCAAACCAAGGGTTCTTGCCAGGGCGGCGGAAGCCCACAGGCAACTGAGAACCCCTCCTCGTTCCCCCTCACCTCCTATATCTCCCATACCAGCGGTTCGGCCTCGAGGTACCCCTGCCCTAAGCAGCACGGCAGGCAACCTCGAATCAACGAGGTACGTGGACCTTGAGGCTACCCATTCCCATCCATATAACGCTGCTCAATCACAACACTCCCAATCAAAACCATCCACATCCTATGCAGCAATGGCTGCATCTCAATCATCCGGCCCCAAACGGCCCTCTATTCAAGCCCAAGTTGCCCCTCCCCCGAGGTCGAGGGGTCGTGCCCAGGTGGACTTACGCCGTCACCCATCAATTGTAGTGGAGGCCCTCCCTAATTGGCCTCGCCATATGGCGGCCATTAGGGAGCGGCTCGGCAGAGCTCCCTCGGCGCGACCCTACGGCGCCGGGTTCCGATTTCTCCCGTCGTCGATCGAGGAGTACAGGGAGGTCCAGGCCTACCTATCGGAGGTCTCTGCCAGGGACAGTGCCATTAAATGGTACTGTTATGCCCTGGCGGAGGACATTCCTTCGAAGGTAGTCGTTCGGGGCCTCCCTGTCGATACCGATGCGGCCGACGTAACCCAGGCCCTAAGAGAGCTGGGCTTCCCGGCCCGGCATGCCCGATGTATCGAGGCCAGGAGGGGTAGGCCAGGCTGCGTGTTTTTCGTGGCCTTGGACCACCTCTCCAAGGACGACCTCGCCCGGTTGTACGCAGTTGAAGAGCTGCTGTACTTGCCGGGGGTGTCAGTGGAGGGATGGCGTTCAGGTCGAGGGCCGGCGCAATGTCATCGTTGCCAGGCCTTTGGGCACGCATCCTCCAACTGCCACCGCGCGGTCCGCTGCGTTAGATGTGCTGAAGAGCACGTAGTAGCGGACTGCCCGAGGCCGAGGGATGGCCCGTTTTCTTGCGCCAACTGCGGAAGGGACGACACTGCCGTCGACAGACGGTGCCCGGTCTTCCGCAGAAGGGCAAGGATGATGGGAGTCACCATTCCCCCTCCGGTACCTCGGGCTCCACGGGCCGAGTTGCATCCGGCTCCGGTACTTCCGTCCTCATCTCAAGCTCCTAAGGGGAAGGGGAAAGGGAAAGGGAAACCCTCCCAGCCCCAGCCCCCTCCCCAGTCCCTATCCATACACCCCGTCGTTGTTGTAGAGGCTAAGTCGTCAGCGGCAACGCTGATGGCAGAAGCCAATGCTCCGCGACGGGGTAACAAACCTCTTCCTGCCCCTCGTAGTATTATCGCTGCCACTCAAGGTATGAATCAACCACCCGGGTCGCAGCCAGGAAATATAAGTGCTAATAATAAAGCCAGCAAAAATAAAAAGAAAAATAAAAATAAAAAAGAGAGAAGGAAATTAAAGAGAAAACTATTGATAGAAGCAGCCGTAGTCCTTCCTCCCCCTTCTCTAGCAACAGCAACAGTAGCAACAAACATACAAACGGCCCAAACCTCCTCAACAGCAATGGAGGTCGATGTTAAGACCCCTCATATCCCCGAAAGTAGCCAAGCCATTGATGCACAAGCCGTGACTGATGCCAACTTGCCTCAGTCGCAACCAACCTCATCTCAGCCCCTTCCCCCCCGCCCTCAGCGCGAGCAGCGCAGCGGTCGGCAGGCCTCACAGCCTGCCGGCTTTGCTGCATGGCTCCTCGCGCTCTGGGAAAAATTGTCCGAGGTGGTCTCCGGAGTGATCCGCGAGATCGCCTCGGGAGCCAGCCCTTTCGGGGCGCTCTTCCAGGAACTGCGCATCATTTATTGGAACCCCGGCGGGGTAAAAACCCGCAAGAACGATCTCTTGGTTCTCGCCCGGGAGTACAACCCTGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCGGGATGTGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGGTGAGTCCTGCCGGGACGCCGTTCAGGGGCACTGCGGCGCTCGTCAGGCGAGACGTGGTGCATGATCAGTTGGATTTGCTGGCCTTCACATCGACAAGGTCGATCGGTGTGAGGATCCACACCTCGGGGGGAGATATGCGGGTTTATTCCGCGTATAGACCCCCGGGGCCTGATTTTCACCCCGGGGACATAAGACGGGTCCTGAATTGCGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTGAACTCAGCAGTGGGCAGGCAGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCCGACGAACCCACGCACATTCCGACCGCCGCGCAACTCCAGCCCGACGTGTTGGATGTGTGCGTTCATAAGGGGCTACGGTGCCCCTTAACTATTGAGGCACTGTACGACCTGGGTACCCCCCATCTCCCTATCCCGGTCACACTGGGAATGGGGCTCACCCGGGTTGCGACCTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGCCTAGTCGACCTTCCCGCAATTCAGGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAAGCGATTATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGCTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTATCGGGGCTATGCGTGGGAGGAACGGATCGAGGAGGCCCGTGAGGACCCCTCGTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGTAATGCTGGAGCGGCAGTTCGCTCCAAATAACTCTGCAACCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGCGCCACCGTTGGGAGATGGTGATTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCATTTTTCCATTTCCCCGAAACGGTCGTGTCATGCATGACACGACTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAACTTGGAAATTGGGCAAGGTTATTGCCCTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTATCGTCCGATCACTCTGCTGTCGCATATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGTCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCGGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTTCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCAGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGCCGCTCGAGCAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCAGGCGCTACCAAGGGAGCTACTGGAACCCCGGCTATGGGAGCTTCGTTCCGGGCAGTGGGGTTTGCCCCGAGGCCCGTTCCGTGCCCCCGAAAGGGGGTACGACGACCCTTCTTCTCTCTTCTCTCTCCTATCCCACGACCCTAACTTCTTACCGATTTTACTATGGGTAACTATACCAATTGTAAAATGA
Protein
MPGGASSPPIISTPGPSRKGRKAAAVIFAHRPSFIPVPGRMDPDPANGPGPSSEARGSLGIPRPRRKARSGSDQGSSGAGDKRPRIGPSPRSKEESGSDEYSSPATSSSSSSSPSSSGSPSPSPPAKPIPKPRVLARAAEAHRQLRTPPRSPSPPISPIPAVRPRGTPALSSTAGNLESTRYVDLEATHSHPYNAAQSQHSQSKPSTSYAAMAASQSSGPKRPSIQAQVAPPPRSRGRAQVDLRRHPSIVVEALPNWPRHMAAIRERLGRAPSARPYGAGFRFLPSSIEEYREVQAYLSEVSARDSAIKWYCYALAEDIPSKVVVRGLPVDTDAADVTQALRELGFPARHARCIEARRGRPGCVFFVALDHLSKDDLARLYAVEELLYLPGVSVEGWRSGRGPAQCHRCQAFGHASSNCHRAVRCVRCAEEHVVADCPRPRDGPFSCANCGRDDTAVDRRCPVFRRRARMMGVTIPPPVPRAPRAELHPAPVLPSSSQAPKGKGKGKGKPSQPQPPPQSLSIHPVVVVEAKSSAATLMAEANAPRRGNKPLPAPRSIIAATQGMNQPPGSQPGNISANNKASKNKKKNKNKKERRKLKRKLLIEAAVVLPPPSLATATVATNIQTAQTSSTAMEVDVKTPHIPESSQAIDAQAVTDANLPQSQPTSSQPLPPRPQREQRSGRQASQPAGFAAWLLALWEKLSEVVSGVIREIASGASPFGALFQELRIIYWNPGGVKTRKNDLLVLAREYNPEVVLLGETKLRPRDVFRIPNYFMYRRDEVSPAGTPFRGTAALVRRDVVHDQLDLLAFTSTRSIGVRIHTSGGDMRVYSAYRPPGPDFHPGDIRRVLNCDSRPALLVGDLNAKHVAWGSRLNSAVGRQLLEDADRGDYSVVGPDEPTHIPTAAQLQPDVLDVCVHKGLRCPLTIEALYDLGTPHLPIPVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPAIQDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAVMLERQFAPNNSATSEAAFHQSVEESVASLLSSPAPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSCMTRLFNSILSTGHFPGTWKLGKVIALPKPGKDRRNPSSYRPITLLSHMGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRVVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASGLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVRAGRYVRNDVIARDLDVEPLEQFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGQALPRELLEPRLWELRSGQWGLPRGPFRAPERGYDDPSSLFSLLSHDPNFLPILLWVTIPIVK

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6AR3     E-value=0.000285445,     Score=111

Ontologies

KEGG
105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439
GO
GO:0003676   GO:0008270   GO:0007018   GO:0008017   GO:0005525   GO:0031386   GO:0048869   GO:0016491   GO:0015930  

Topology

Length:
1676
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05038
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00002
outside
1  -  1676
 
 

Population Genetic Test Statistics

Pi
14.287351
Theta
23.710324
Tajima's D
-0.865062
CLR
108.020652
CSRT
0.160641967901605
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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