Silkworm Genome Informatics Database

Gene

KWMTBOMO13328

Pre Gene Modal

BGIBMGA004680

Annotation

PREDICTED:_basic_helix-loop-helix_neural_transcription_factor_TAP_[Plutella_xylostella]

Location

Bomo_Chr22(+):13836492-13837927 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 4.145

CDS

ATGTTCGGTACAGAATTCGAAAACTATTGTGATTTCAACGATAGTATCTGCAGCAACGATTCCGGCTTCGATAGATCTTACAATGACTCTACAACTACTCCAGTTTCCAACAACAGTACACACACAAAACTTGACATATCCGACTTAGGTGTTTCACTTACACCAGTCAAAGAAACAAATGTAAGACGAAAACTGTTCAATGACTTCGACTTCACGAGTCCAATCGACGACTTAGGTGCCTTTGAGGAAAACATCAAATCATCTGTAACATCCACACCAAAGAAAGAGAGAAAATTGAAAGATCCAAACAAGCCCAAAAGGAAATACGCAAACGGAAAGAACAGAGTGACAAGATGCAAGAGTCCAACACAAATTTTAAGAATAAAAAGGAATAGGCGGATGAAAGCGAACGACAGAGAAAGAAACAGAATGCACATGCTCAATGAGGCTTTAGATAGACTGAGATGTGTGCTGCCGACATTTCCCGAGGACACGAAACTTACTAAAATAGAGACACTCAGATTTGCTCACAATTACATATTTGCTCTAAGTCAAACATTAGAATCACTGAACAATATCAACTCCGATCAAACACAAGTAGCAAATCCAGCATTGAACTGTGATAAACTACAAAGTTATCAATTTAACGGAGACAAAGTTACTAAAGATGCGTTTAGAGAAATATTTTTAGTTCCTAATAAATCGGAAGGTGTTGGTGATGGAAGCTATCGAAATTTTCAAGGATACAGCAAACCTTTTCCAAATGGTTCTAATTTCATGCAAACTCCAGAAGGTGTTCTGATTAACGTTGGCAACGTTACGGTGTCGGTAAATAATAAGGGTGGTAATTGTATAACTTCAACAACGGGCAGTGGATTCTTCACGCACCCAGCTAGCTTCGGTGACGACCTTACCCAACAGAACTTCTACCACCAAAGAAATTATAGCCAAAATAACGGATATAACGAACATTTTTACCATCCACCGAACAATCAAGAAGAGTACTTTAACCATAAGAATTACGAAACGTTCAAGAACGCATTTGACACTGCGAAAAACCAAAAACGAATAAAAATAGAGGATTATGGATCCAATCACGAGAAACATGCAACATCTGTCTACGGATATAACGACATTAACTGTTATAATAGCGATAATAATGATTATTTACAAAACACATATTATTATAACGATCAGAGATGTTATAGAAATTTTTATAATCGAACTAACATGCCTGTTGTTAATGCTCAAATATAA

Protein

MFGTEFENYCDFNDSICSNDSGFDRSYNDSTTTPVSNNSTHTKLDISDLGVSLTPVKETNVRRKLFNDFDFTSPIDDLGAFEENIKSSVTSTPKKERKLKDPNKPKRKYANGKNRVTRCKSPTQILRIKRNRRMKANDRERNRMHMLNEALDRLRCVLPTFPEDTKLTKIETLRFAHNYIFALSQTLESLNNINSDQTQVANPALNCDKLQSYQFNGDKVTKDAFREIFLVPNKSEGVGDGSYRNFQGYSKPFPNGSNFMQTPEGVLINVGNVTVSVNNKGGNCITSTTGSGFFTHPASFGDDLTQQNFYHQRNYSQNNGYNEHFYHPPNNQEEYFNHKNYETFKNAFDTAKNQKRIKIEDYGSNHEKHATSVYGYNDINCYNSDNNDYLQNTYYYNDQRCYRNFYNRTNMPVVNAQI

Uniprot

H9J590 A0A2H1X117 A0A2A4JXY8 A0A0L7LR67 A0A212EQV6 A0A194PXV3 + More
A0A194REG1 A0A1B0GMY3 A0A336M970 A0A0L0CGQ5 A0A0K8W1G4 A0A1B0CK21

Pubmed

19121390 26227816 22118469 26354079 26108605

EMBL

BABH01039687 ODYU01012558 SOQ58952.1 NWSH01000459 PCG76252.1 JTDY01000280 + More
KOB77935.1 AGBW02013197 OWR43882.1 KQ459586 KPI98157.1 KQ460323 KPJ15854.1 AJVK01027801 UFQT01000523 SSX24927.1 JRES01000428 KNC31367.1 GDHF01007347 JAI44967.1 AJWK01015645 AJWK01015646

Proteomes

UP000005204 UP000218220 UP000037510 UP000007151 UP000053268 UP000053240 + More
UP000092462 UP000037069 UP000092461

PRIDE

H9J590

Pfam

PF00010 HLH + More
PF00028 Cadherin

Interpro

IPR011598   bHLH_dom        + More
IPR032666   TAP-like
IPR036638   HLH_DNA-bd_sf
IPR002126   Cadherin-like_dom
IPR015919   Cadherin-like_sf

SUPFAM

SSF47459 SSF47459 + More
SSF49313 SSF49313

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

H9J590 A0A2H1X117 A0A2A4JXY8 A0A0L7LR67 A0A212EQV6 A0A194PXV3 + More
A0A194REG1 A0A1B0GMY3 A0A336M970 A0A0L0CGQ5 A0A0K8W1G4 A0A1B0CK21

PDB

2QL2 E-value=3.57805e-14, Score=190

KEGG

101744123 no KO assigned | (RefSeq) basic helix-loop-helix neural transcription factor TAP

GO

GO:0006355 GO:0046983 GO:0030182 GO:0005509 GO:0007156 GO:0016020 GO:0016787 GO:0020037 GO:0008270 GO:0016881 GO:0031386 GO:0048869 GO:0003676 GO:0016491 GO:0015930

PANTHER

PTHR19290:SF129

Length:

418

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00367

outside

1 - 418

Pi

151.413986

Theta

164.695555

Tajima's D

-0.320783

CLR

0.754962

CSRT

0.28323583820809

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics