Silkworm Genome Informatics Database

Gene

KWMTBOMO13124

Pre Gene Modal

BGIBMGA000319

Annotation

PREDICTED:_PR_domain_zinc_finger_protein_1_[Bombyx_mori]

Location

Bomo_Chr22(+):8852901-8864178 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.038

CDS

ATGAGACTCGCAAATAGCGAAGAAGTACCAAGTACAACAGTGGTGGGCCGCAGCAACAACGCGAATAGCCCTGAAAGACTCGGCCGGCTTACAGCAGTACCAGACTCAGGAGCCTACGATGTAACACGCATGCGTGAGGAAGAATTTGAAAGGCTAACTGTGTACATAGTCCCCGACGTACCATGCGAAAGGGGAACATTAAACAGAGCTGAAAAAACACTCCCGCGCAGTCTGACTTTACGACCATCTGCAGTGCTATCGACGCCAAATACACCGACTGAAGGAGTATGGAGCATTGGTGTCATACCACGGGGAACGCGCTTCGGGCCGTTTGAGGGAACTAGAACCCCAAATAAACCTAACGACAAAATTTCTTGGCGTTATTACTGGAGAGTACAGGAAACTGTCAGACATCATACATACGGAAATATTAAGATATTCATAGATAGTGATTATTATTACCTGGATGGGTCGGATACAAGCGTCGCCAATTGGATGCGATACGTCGCTTCCGCGTATTCGCTCTCAGTAATGAACCTCGTTGCTTGTCAGCACCAAGAACACATATATTTCTACACTGTCAGGGACATCATGCCCAATGAAGAGCTAATGGTGTGGTATTGTAAAGATTTTGCAACGAGATTAGGATATGACATCGATCCAGAAAGAGCTACATACTCTATATGTAAAGAAGAAACTATTAAGAAAGCATACGGCCTGCCACCTGCGCCCGTACATCCCGAAATCGCTTTTAATCATATGAAATACGTACTTGGCTTGACCAATGCTAAAGAACTACTAGAAACTGAAATACCAAGTCGCAGGCGAAAACGTGAAAATAGTGATAAACATGACAATCAAAACGTTCTTATCAGAGAAGATCCACGTTGCATTGCTAAAAATGAGAGAACGATAGTTCGGACTGACATTTCTACAAATATAGTCCACAATAGTGACACACCTATTATTAACGAACAGTCTGCATCTGGAAGTCTACTTCCAGTTAAAATGGCCCATAGAGAAAACCCAACGCTAATAATACACCAGCATAAAGAAAGCACTTCTCAATTGGTAATACACCAACTAGAAAACCCGAGACTTCAAAGTAACCGATCACCCATTCAAAGTCACCTACGTGATGTTAGAGTTTCATCACCTCTGACACACCATCACGATAAACCTGGAAACAAGTCACCTATGTTGACTCACTGTGGTGGACCATCATACGAACATCAACTAACTCCCAATGATGGATCGGTGCGGTCTGACGAAGGCTATCATAGCAACGGATACCATGATGAATTCACACCACCGGAAGATTCAAGTGATTCCGATGTTGAAAACTACGTTCTCGACTGTTCCAATAAGACGAATGAACCAAAAGAGACCGTCATAGTACAAAAAATGGAACAAGACATGCATCGTAATGAATACAGAAAAGTGAAAATAAAAATGCCAAGAGCATATCAATATCAAAACCATAAAGACATGGACTGTGAAAGTGAAACTGGGTTGGTTATTGCTGAAGATGTTCCAGACAATATGCCACAAAACTTGTCACCACCGAGAAGAGATCCAGCGACTTCGACTGTTATCGTATTGGAGTCTTCACAAAATACTGTTGTGCCCATTAACAAGCCTTATTATGAAGATGGTCCGCTTTCTCCTTCTCCACAACCAGCTTTTATGAGTTTGATTCAAAATGGAAATGTCGGAGGACAAGTACTTCCGCCGCATGGGAGCGTGAGTCCCGATGGTAGCTGTGGACTCATGATGTCACCGATTAGTCCTAATTCTCAAGCGTCTCGGGGGTACAGGAGCTTACCTTATCCTCTAAAAAAGAAGGACGGAAAAATGCATTATGAATGTAACGTTTGTTGTAAGACTTTTGGTCAATTGTCGAATCTCAAAGTCCATTTAAGGACACATTCCGGAGAAAGACCGTTCAAATGCAATGTATGTAATAAATCGTTTACTCAACTAGCTCATTTACAAAAACATCACTTAGTGCATACTGGAGAAAAGCCACATCAATGTGATATTTGCAAGAAACGTTTTTCTTCTACATCGAATTTAAAAACACATTTACGTCTCCATTCAGGACAAAAACCTTATGCTTGTGATTTATGTATGCAAAAGTTTACACAATTCGTTCATTTGAAACTACACAAAAGACTTCACACTAACGATCGTCCGTACGTCTGCCAAGGTTGTGACAAAAAATATATAAGCGCATCTGGTTTGCGAACACATTGGAAAACAACGAGCTGTAAACCAAATAATATTGAAGAAGTATTGGCCATCACAAACGCAGCTAACACTGAATGCATCGGTAACGTCGACAAAGACTGTCACGAAAGAGAGGGGCACGATGCTTACGAGGTGCACTCTCCATCACAAGGAGGGCTGGTGGGAGCCGGTGGGGCGCGTGTCGCAATGTCACACAGTGAAGCCATGCTGGGAGGGCACGCGCACACTACCAGACCGCACTTAGCGTCAGGACACGGACAATTGTCGCCAGCCCACGGAACTCAATACCGTCCCTTAGCACCTCCACCACCCCCTGATCATGATCAACAGCAGCCGCATTATAATTCAGCCGGAACCGAGCCCAGGCCTAGCGTTATAGAATCCAGCCAGCCACTCATCATAGAATGCACCTGA

Protein

MRLANSEEVPSTTVVGRSNNANSPERLGRLTAVPDSGAYDVTRMREEEFERLTVYIVPDVPCERGTLNRAEKTLPRSLTLRPSAVLSTPNTPTEGVWSIGVIPRGTRFGPFEGTRTPNKPNDKISWRYYWRVQETVRHHTYGNIKIFIDSDYYYLDGSDTSVANWMRYVASAYSLSVMNLVACQHQEHIYFYTVRDIMPNEELMVWYCKDFATRLGYDIDPERATYSICKEETIKKAYGLPPAPVHPEIAFNHMKYVLGLTNAKELLETEIPSRRRKRENSDKHDNQNVLIREDPRCIAKNERTIVRTDISTNIVHNSDTPIINEQSASGSLLPVKMAHRENPTLIIHQHKESTSQLVIHQLENPRLQSNRSPIQSHLRDVRVSSPLTHHHDKPGNKSPMLTHCGGPSYEHQLTPNDGSVRSDEGYHSNGYHDEFTPPEDSSDSDVENYVLDCSNKTNEPKETVIVQKMEQDMHRNEYRKVKIKMPRAYQYQNHKDMDCESETGLVIAEDVPDNMPQNLSPPRRDPATSTVIVLESSQNTVVPINKPYYEDGPLSPSPQPAFMSLIQNGNVGGQVLPPHGSVSPDGSCGLMMSPISPNSQASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCNKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCMQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNIEEVLAITNAANTECIGNVDKDCHEREGHDAYEVHSPSQGGLVGAGGARVAMSHSEAMLGGHAHTTRPHLASGHGQLSPAHGTQYRPLAPPPPPDHDQQQPHYNSAGTEPRPSVIESSQPLIIECT

Uniprot

A0A0L0BW96 A0A1A9VHD2 A0A1B0FDS5 A0A1A9Z965 W8BZ75 B4H3E2 + More

Pubmed

26108605 24495485 17994087

EMBL

JRES01001347 KNC23504.1 CCAG010000380 GAMC01012026 GAMC01012025 GAMC01012024 + More
JAB94529.1 CH479206 EDW30882.1

Proteomes

UP000037069 UP000078200 UP000092444 UP000092445 UP000008744

Pfam

PF00856 SET + More
PF00096 zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR001214   SET_dom

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A0L0BW96 A0A1A9VHD2 A0A1B0FDS5 A0A1A9Z965 W8BZ75 B4H3E2 + More

PDB

2I13 E-value=2.46713e-29, Score=324

KEGG

101746019 no KO assigned | (RefSeq) PR domain zinc finger protein 1

GO

GO:0003676 GO:0046872 GO:0005515 GO:0000122 GO:0003700 GO:0005634 GO:0005737 GO:0048869 GO:0016491 GO:0015930

Length:

887

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00557

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00028

outside

1 - 887

Pi

250.007214

Theta

207.997213

Tajima's D

0.741206

CLR

0.020699

CSRT

0.585420728963552

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics