Gene

KWMTBOMO12908

Pre Gene Modal

BGIBMGA000219

Annotation

PREDICTED:_nuclear_transcription_factor_Y_subunit_B-4_[Amyelois_transitella]

Location

Bomo_Chr22(+):3964082-3967459      View in EpiBrowser

Transcription factor

NF-YB

Location in the cell

Nuclear   Reliability : 4.071

CDS

ATGGATAGCGACGAACTTGGAAATGACTTAGTGAGATTGGACAATGGATTTTTGGTAGCGGATGACACATTTGTTGTCAATTCTGATGATGTGTTAGAAGATGAAAACAACTCGGACTCTGGGAGTAAGAGCAATGCACCGCTAAGAGAACAGGATAGATTTTTACCAATCGCGAATATAGCTAAAATAATGAAACGGGCAATACCAGAGAATGGAAAGATAGCAAAAGATGCAAGGGAATGTGTTCAGGAATGTATATCAGAATTCATATCGTTTGTAACGAGCGAGGCTAGTGACAGATGCAAGGTTGAAAAACGCAAGACCATCAACGGGGAAGATGTATTGTTCGCATTGAATACCCTGGGATTTGATAACTACGTGAAACCTTTGCGTTTGTACTTGACAAAATATAGAGAAATTGTTATGTCACCATGCAACTGCGAGCATGATCAGTACAACCTGCTAAATACGCCAGGCAAATTTAAAAGGCCTTATTTGCAGGTCACAATCAACAAATTGAACAAGACCATAGTTTTATATAGCGAAGACGGCACGGCCTGTGTTTCAAACGAAAATGAAATCGATACACAAACTGAATCCACCATTCTCTACGTCCCAACCACTTATCCAAAAGTCGTCGAAGAATTTATTCTTACATGA

Protein

MDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVTSEASDRCKVEKRKTINGEDVLFALNTLGFDNYVKPLRLYLTKYREIVMSPCNCEHDQYNLLNTPGKFKRPYLQVTINKLNKTIVLYSEDGTACVSNENEIDTQTESTILYVPTTYPKVVEEFILT

Uniprot

H9ISJ2   A0A2A4JCZ7   A0A1E1VY74   A0A212FCV3   A0A2H1VG94   A0A194Q7U0   + More
A0A067R1S4   A0A1Y1L3A1   E2B7Q9   A0A2P8XQR7   D6X1W7   A0A026W2Q0   A0A232FFD0   K7JKR6   A0A2A3EP10   A0A088A9R6   A0A3S1BJ83   E1ZW47   A0A0L7KUE0   A0A0J7NJL9   A0A0L7QX60   A0A310SBX0   A0A0B6ZKW5   A0A182NTW2   A0A182ICA3   B0XLC7   A0A1S4GY10   A0A2S2R5B5  

Pubmed

19121390    22118469    26354079    24845553    28004739    20798317    + More
29403074    18362917    19820115    24508170    30249741    28648823    20075255    26227816    12364791   

EMBL

BABH01013556    NWSH01001872    PCG69841.1    GDQN01011415    JAT79639.1    AGBW02009152    + More
OWR51550.1    ODYU01002136    SOQ39244.1    KQ459324    KPJ01588.1    KK852984    KDR12853.1    GEZM01068002    JAV67271.1    GL446201    EFN88272.1    PYGN01001512    PSN34351.1    KQ971371    EFA09953.1    KK107522    QOIP01000001    EZA49309.1    RLU26357.1    NNAY01000287    OXU29471.1    KZ288212    PBC32869.1    RQTK01000051    RUS89600.1    GL434776    EFN74556.1    JTDY01005528    KOB66912.1    LBMM01004213    KMQ92695.1    KQ414705    KOC63151.1    KQ773232    OAD52406.1    HACG01022303    CEK69168.1    APCN01000789    DS234417    EDS33932.1    AAAB01008964    GGMS01015998    MBY85201.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000027135    UP000008237    + More
UP000245037    UP000007266    UP000053097    UP000279307    UP000215335    UP000002358    UP000242457    UP000005203    UP000271974    UP000000311    UP000037510    UP000036403    UP000053825    UP000075884    UP000075840    UP000002320   

PRIDE

H9ISJ2   

Pfam

PF00808   CBFD_NFYB_HMF

Interpro

IPR003958   CBFA_NFYB_domain        + More
IPR009072   Histone-fold       
IPR003956   Transcrpt_fac_NFYB/HAP3_CS       

SUPFAM

SSF47113   SSF47113       

Gene 3D

1.10.20.10    

ProteinModelPortal

H9ISJ2   A0A2A4JCZ7   A0A1E1VY74   A0A212FCV3   A0A2H1VG94   A0A194Q7U0   + More
A0A067R1S4   A0A1Y1L3A1   E2B7Q9   A0A2P8XQR7   D6X1W7   A0A026W2Q0   A0A232FFD0   K7JKR6   A0A2A3EP10   A0A088A9R6   A0A3S1BJ83   E1ZW47   A0A0L7KUE0   A0A0J7NJL9   A0A0L7QX60   A0A310SBX0   A0A0B6ZKW5   A0A182NTW2   A0A182ICA3   B0XLC7   A0A1S4GY10   A0A2S2R5B5  

PDB

4CSR     E-value=2.38442e-37,     Score=387

KEGG

101736158    K08065 nuclear transcription Y subunit beta | (RefSeq) transcriptional activator hap3

GO

GO:0005634   GO:0046982   GO:0006355   GO:0043565   GO:0045893   GO:0016602   GO:0004527   GO:0006457   GO:0051082   GO:0005515   GO:0045181   GO:0050660   GO:0008152   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

Length:

219

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00281

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02430

outside

1  -  219

 

 

Pi

215.002991

Theta

177.524695

Tajima's D

0.79518

CLR

0.000278

CSRT

0.604319784010799

Interpretation

Uncertain