Gene

KWMTBOMO12738  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007172

Annotation

PREDICTED:_glycosylated_lysosomal_membrane_protein_A-like_[Bombyx_mori]

Location

Bomo_Chr21(-):13561124-13572009      View in EpiBrowser

Transcription factor

NCU-G1

Location in the cell

PlasmaMembrane   Reliability : 2.491

CDS

ATGAATTTCTTAATTTTATTGTTGAGTAGCGCGATATCTATAGTGTGTGGACAAGATCGAGTGATAACAGCGAAATTAAATCCGGGATGCGCCGAATGTACGTCAGCAAACACTTTAGTTTATATAAAGGCTGACAGCTCCAAGGACAGCATCCACCAGCTATGGGACTTCACAGGTGGGATCCCTACTGTGGTGTTTGCACTAACCGAACTGAACTCGACGATGCAAGTGAAATGGGACAGACAAGTGCCGGTGAAGTTTTTGTTGTCCGAAACACCAAAGTATTGCTTCGCTATTGCCATAGACAAGCTCTACGAATACAATGATGTGGAGGATAAGGGCCACATCAGCCCGCAGTGCGAACAGAGGCCGATGTCTCTCAAGTATATGTCGTGGACCCTGGTCGACAGCGTGCTCTCCGACAAGGAGGTGATGGTTCGAGTCCACGGTCAATATAAGCACAGCTGGCGAGCTGGCGTCGTGGATGTCAAGTTGGATCTCATCCCGTTCTACGACTACGCGGCCGAACTGCCCCGTCTCATACACACAGCAAACTCGACCCTCGTGGACGTTGGCCTCGTCAACATCACTACTTCGAAGGACTACAACTCGTCCCGTTTCGCCCTGCACATGCTGTTGGTCAGCACCGACGGATGGGGGGAGACCATGCACTACACCATGAGGAAGAGTCTCGACGACGAGCACACTCCAGGAGTTTTTGAGATCATCGAGATAAAGACGCCAGAGTCGTACGTGAAGGACGACGGCGGCTACATCCAGTTCCGGCCCGTGGGCTACACCGAACCGAAGCGCGAGGTCTCCTCGTCCACCTCCGTCCGAGTCTCCCCGCTCAAGAAGAGCGCCGTGCCGGAGCGCAGCACGCTGGAGCGTTTCTTCCGCGACTTCGAGACGGAATCTCTCCTGGTGCAAGACGTGTTCGTGTCGATCGGCCTCACCGGGGACCAGTTCTACAGACAACACAACTTTACCTCCTGGTCGTTCACGATGGGCTACGGCAGCCCGCCCCTAGAAACATTCTCGCTGTTCGTGATAATGATCATATCCATCGGCCTCGGGGTGCCCTTGTTGCTGGCGCTCTCTGGGGTCGTCTACGTGGTGATCTCCAGGATCAGACAGAGGAACTCCAACCAGCCGACCAGATTCACGGACGAGGAATGA

Protein

MNFLILLLSSAISIVCGQDRVITAKLNPGCAECTSANTLVYIKADSSKDSIHQLWDFTGGIPTVVFALTELNSTMQVKWDRQVPVKFLLSETPKYCFAIAIDKLYEYNDVEDKGHISPQCEQRPMSLKYMSWTLVDSVLSDKEVMVRVHGQYKHSWRAGVVDVKLDLIPFYDYAAELPRLIHTANSTLVDVGLVNITTSKDYNSSRFALHMLLVSTDGWGETMHYTMRKSLDDEHTPGVFEIIEIKTPESYVKDDGGYIQFRPVGYTEPKREVSSSTSVRVSPLKKSAVPERSTLERFFRDFETESLLVQDVFVSIGLTGDQFYRQHNFTSWSFTMGYGSPPLETFSLFVIMIISIGLGVPLLLALSGVVYVVISRIRQRNSNQPTRFTDEE

Similarity

Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.

Uniprot

H9JCC7   A0A2H1V4V8   A0A1E1WLR1   A0A212FCR4   A0A2A4JVD7   A0A0N1INZ9   + More
A0A437AWX3   A0A194QM05   A0A0L7LG30   B0XC61   A0A2J7QXI7   A0A195FAI2   A0A1Q3FEG9   A0A1Q3FEF8   A0A1B0DMW1   A0A2P8YLY4   Q0C746   E2BBX0   Q7QA54   A0A182NL39   A0A182MHS4   A0A154PP03   A0A182W3A1   E2AYQ8   A0A182XF84   A0A151IBW2   A0A1W7R7Z5   A0A182Y8Z0   A0A067QU12   A0A182QFW4   E9INK7   A0A023ERI9   A0A158NCE4   A0A195BWE2   A0A182PLI8   A0A1B6E8L9   A0A182T054   A0A1L8DTM7   F4WWY6   A0A182K9Y1   A0A1L8DTP7   A0A023ETR9   A0A151WMM4   A0A1L8DTI8   A0A1L8DTD8   A0A182KZQ9   A0A0J7KQV6   A0A0C9RLZ2   A0A182RI07   A0A0C9RFA9   A0A182VNM5   A0A0L7RG53   A0A182HVQ6   U5EN62   A0A182FQ65   A0A2M3Z6P8   A0A2M3Z6C2   A0A2M3ZDZ1   A0A2M3Z6D0   A0A2A3E7J3   A0A2M4BPP7   A0A2M4BSB0   A0A2M4BPW1   A0A2M4BQ09   A0A2M4ALB7   A0A087ZV47   W5JT17   A0A2J7QXG5   A0A1B6F7K0   A0A1B6H155   A0A1B6GQA5   A0A026VXB5   A0A1B6JGH5   A0A1B6IFE8   A0A224XHJ0   A0A182GHF1   K7IZT9   A0A232F7S5   E0VUP3   A0A1B0CH30   A0A1B0CDC9   T1I3Y6   A0A336LLA7   C3Y263   E9GU97   A0A1D2NJD3   A0A3R7QY22   A0A0P6DLS1   A0A0P5ZFF9   A0A0P5LWI9   A0A0M8ZV49   T1JFV0   A0A0P4XT94   A0A0N8ENG3  

Pubmed

19121390    22118469    26354079    26227816    29403074    17510324    + More
20798317    12364791    14747013    17210077    25244985    24845553    21282665    24945155    21347285    21719571    20966253    20920257    23761445    24508170    30249741    26483478    20075255    28648823    20566863    18563158    21292972    27289101   

EMBL

BABH01031549    ODYU01000681    SOQ35871.1    GDQN01003105    JAT87949.1    AGBW02009157    + More
OWR51498.1    NWSH01000508    PCG75971.1    KQ460882    KPJ11490.1    RSAL01000317    RVE42593.1    KQ458981    KPJ04486.1    JTDY01001247    KOB74412.1    DS232677    EDS44667.1    NEVH01009381    PNF33274.1    KQ981727    KYN37054.1    GFDL01009106    JAV25939.1    GFDL01009116    JAV25929.1    AJVK01017013    PYGN01000501    PSN45259.1    CH477186    EAT48981.1    GL447175    EFN86794.1    AAAB01008898    EAA09281.5    AXCM01001209    KQ435007    KZC13593.1    GL443983    EFN61421.1    KQ978076    KYM97211.1    GEHC01000410    JAV47235.1    KK853271    KDR09134.1    AXCN02000084    GL764306    EFZ17854.1    GAPW01001788    JAC11810.1    ADTU01011825    KQ976396    KYM92902.1    GEDC01003010    JAS34288.1    GFDF01004354    JAV09730.1    GL888417    EGI61229.1    GFDF01004293    JAV09791.1    GAPW01001784    JAC11814.1    KQ982934    KYQ49152.1    GFDF01004353    JAV09731.1    GFDF01004352    JAV09732.1    LBMM01004175    KMQ92733.1    GBYB01009255    JAG79022.1    GBYB01011782    JAG81549.1    KQ414598    KOC69813.1    APCN01005809    GANO01000721    JAB59150.1    GGFM01003430    MBW24181.1    GGFM01003318    MBW24069.1    GGFM01006023    MBW26774.1    GGFM01003257    MBW24008.1    KZ288348    PBC27474.1    GGFJ01005914    MBW55055.1    GGFJ01006537    MBW55678.1    GGFJ01005913    MBW55054.1    GGFJ01005912    MBW55053.1    GGFK01008264    MBW41585.1    ADMH02000531    ETN66080.1    PNF33275.1    GECZ01031637    GECZ01023573    GECZ01022185    JAS38132.1    JAS46196.1    JAS47584.1    GECZ01001357    JAS68412.1    GECZ01018562    GECZ01005168    GECZ01001707    JAS51207.1    JAS64601.1    JAS68062.1    KK107648    QOIP01000008    EZA48305.1    RLU19675.1    GECU01033059    GECU01028967    GECU01027725    GECU01020891    GECU01017616    GECU01014682    GECU01010067    GECU01009401    GECU01006986    JAS74647.1    JAS78739.1    JAS79981.1    JAS86815.1    JAS90090.1    JAS93024.1    JAS97639.1    JAS98305.1    JAT00721.1    GECU01022086    JAS85620.1    GFTR01005922    JAW10504.1    JXUM01063533    KQ562255    KXJ76300.1    NNAY01000704    OXU26891.1    DS235787    EEB17099.1    AJWK01011917    AJWK01007677    AJWK01007678    AJWK01007679    ACPB03003299    UFQT01000045    SSX18822.1    GG666480    EEN65953.1    GL732565    EFX77012.1    LJIJ01000030    ODN05076.1    QCYY01000789    ROT82686.1    GDIQ01139228    GDIQ01102756    GDIQ01090463    JAN04274.1    GDIP01047221    LRGB01002384    JAM56494.1    KZS07946.1    GDIQ01173177    JAK78548.1    KQ435830    KOX71755.1    JH432185    GDIP01238293    JAI85108.1    GDIQ01009564    JAN85173.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053240    UP000283053    UP000053268    + More
UP000037510    UP000002320    UP000235965    UP000078541    UP000092462    UP000245037    UP000008820    UP000008237    UP000007062    UP000075884    UP000075883    UP000076502    UP000075920    UP000000311    UP000076407    UP000078542    UP000076408    UP000027135    UP000075886    UP000005205    UP000078540    UP000075885    UP000075901    UP000007755    UP000075881    UP000075809    UP000075882    UP000036403    UP000075900    UP000075903    UP000053825    UP000075840    UP000069272    UP000242457    UP000005203    UP000000673    UP000053097    UP000279307    UP000069940    UP000249989    UP000002358    UP000215335    UP000009046    UP000092461    UP000015103    UP000001554    UP000000305    UP000094527    UP000283509    UP000076858    UP000053105   

PRIDE

H9JCC7   

Pfam

PF15065   NCU-G1        + More
PF02005   TRM
PF01395   PBP_GOBP
PF18332   XRN1_D1
PF18129   SH3_12
PF03159   XRN_N
PF17846   XRN_M

Interpro

IPR029382   NCU-G1        + More
IPR029063   SAM-dependent_MTases       
IPR002905   Trm1       
IPR042296   tRNA_met_Trm1_C       
IPR006170   PBP/GOBP       
IPR036728   PBP_GOBP_sf       
IPR041412   Xrn1_helical       
IPR041385   SH3_12       
IPR004859   Put_53exo       
IPR016494   5_3_exoribonuclease_1       
IPR040992   XRN1_D1       
IPR027073   5_3_exoribonuclease       

SUPFAM

SSF53335   SSF53335        + More
SSF47565   SSF47565       

Gene 3D

3.30.56.70     1.10.238.20    

ProteinModelPortal

H9JCC7   A0A2H1V4V8   A0A1E1WLR1   A0A212FCR4   A0A2A4JVD7   A0A0N1INZ9   + More
A0A437AWX3   A0A194QM05   A0A0L7LG30   B0XC61   A0A2J7QXI7   A0A195FAI2   A0A1Q3FEG9   A0A1Q3FEF8   A0A1B0DMW1   A0A2P8YLY4   Q0C746   E2BBX0   Q7QA54   A0A182NL39   A0A182MHS4   A0A154PP03   A0A182W3A1   E2AYQ8   A0A182XF84   A0A151IBW2   A0A1W7R7Z5   A0A182Y8Z0   A0A067QU12   A0A182QFW4   E9INK7   A0A023ERI9   A0A158NCE4   A0A195BWE2   A0A182PLI8   A0A1B6E8L9   A0A182T054   A0A1L8DTM7   F4WWY6   A0A182K9Y1   A0A1L8DTP7   A0A023ETR9   A0A151WMM4   A0A1L8DTI8   A0A1L8DTD8   A0A182KZQ9   A0A0J7KQV6   A0A0C9RLZ2   A0A182RI07   A0A0C9RFA9   A0A182VNM5   A0A0L7RG53   A0A182HVQ6   U5EN62   A0A182FQ65   A0A2M3Z6P8   A0A2M3Z6C2   A0A2M3ZDZ1   A0A2M3Z6D0   A0A2A3E7J3   A0A2M4BPP7   A0A2M4BSB0   A0A2M4BPW1   A0A2M4BQ09   A0A2M4ALB7   A0A087ZV47   W5JT17   A0A2J7QXG5   A0A1B6F7K0   A0A1B6H155   A0A1B6GQA5   A0A026VXB5   A0A1B6JGH5   A0A1B6IFE8   A0A224XHJ0   A0A182GHF1   K7IZT9   A0A232F7S5   E0VUP3   A0A1B0CH30   A0A1B0CDC9   T1I3Y6   A0A336LLA7   C3Y263   E9GU97   A0A1D2NJD3   A0A3R7QY22   A0A0P6DLS1   A0A0P5ZFF9   A0A0P5LWI9   A0A0M8ZV49   T1JFV0   A0A0P4XT94   A0A0N8ENG3  

KEGG

101737943    no KO assigned | (RefSeq) glycosylated lysosomal membrane protein A-like

GO

GO:0016021   GO:0004809   GO:0000049   GO:0005764   GO:0005549   GO:0000956   GO:0003676   GO:0008409  

PANTHER

PTHR31981   PTHR10631   PTHR12341   PTHR12341:SF7  

SignalP

Position:   1 - 17,         Likelihood:  0.994521

 

 

Length:

392

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

24.06996

Exp number, first 60 AAs:

0.02844

Total prob of N-in:

0.00157

outside

1  -  351

TMhelix

352  -  374

inside

375  -  392

 

 

Pi

20.711349

Theta

20.050377

Tajima's D

0.14062

CLR

0.28325

CSRT

0.413179341032948

Interpretation

Uncertain