Silkworm Genome Informatics Database

Gene

KWMTBOMO12727

Pre Gene Modal

BGIBMGA007189

Annotation

PREDICTED:_zinc_finger_protein_845-like_[Plutella_xylostella]

Location

Bomo_Chr21(+):13465040-13477100 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.739

CDS

ATGTACAGTCTACAGTCTAATCCATTACAAACTTATTTTGAAGAAACATTAGGAGTTAATCCTGTCTGTTCTATGGATTTGCCGCAGTGTGTGTGTTATGTATGTGCAGCATTATTGCAAAAATATAGTAGGTTCAAAACTAAGTGCTTACTTGGACAATCTGTGCTCTACCAAATACTAAACTCTGGTAAAAAGATTACAATCACATCAGTCCAAGAACTAGACCGAAGCAATTTAAAAACACCATTCGCCGTGTACACTGAAACAGATGTTAAAACAATTCACACAGTTTCCGACGATCCGAAGCTTCCAATTAAAGAAGAAATAGACATAGCGATAGATAGTAAAACATCATTAGAAAATGACCTGCAAGTGAATGAAATATTTCGTAAGGATGGCGAGTATGTGAAAGATGAGGATTACGGTGATTTCCCTTCTCAGCTAGAAGAGACAAGCGACGACGAACCGCTTTTAATGCACAAAATAAAGAAAGCTAAGAAAGCCAAAAAGAAAACGACCAAAAAGGATAAGAATAAAGTTGATTATATTTTGGCTGAAGACTTTCAAGGTGTCGAAGCAACAGACGATTCTTCGGCGTTACCACCAGAGATAACAGAAGTTTTACAGTCCAGAAAGAGAGGTCGACCAAGTAAAAAGAGAGTACAGGCAGAACCTGCGGGAAAGAAACGTAGAAGAACGAAAAATACGGGTGGGGTCACTGAAGACGATATTGTCTTGGAGGAATGTTGTACAATAACAACATTGAGTCAAGAAGAACAGCTGGAGGAGATCAACAAGCGGCAGTACTCCAGCAACTACATGAACGCTCAGTACAAGTGCCAGCTCTGTTACAAGGGCTTCATAGACACAGAGGCCTGGAGACATCACGTCTCCAAGCACTCACCCAGCGCGGGTGCAATAGAGTGTCCAGTGTGCAAGTTCCGCTTCGAGAACAAACGCCAGTTCCAGAAGCACGCCTCCAACCACGAGAAGAAGTACGCCTGCAACTACTGCGACCACGTCTCCGCCACGACAACCCAAGCGAAGCAGCACCAGCGCTGGCACAGGGGCGTCACGTACAAGTGCCAACACTGCGACGAGGTGTCCACCAAGTGGACGTCGTACCTGAGCCACGTACGCATGAAGCACCCCTCGGAGTTTATATGCGGCGCGTGCGGCTCCTCCTTCGTGAGCCGCCTGGGGCTGGCCATGCATAAGACCATGATGCACAAGGACCTGGATGAGAAGTCCGAAGCGGGCCCGTACTGCGCGGAGTGCGACGTCCAGTTCGCGTCGCTGGAGGCCTACAAGAGGCACATGGTCACGTCCGTCAAGCACGCCGAGCTCACGCTCACCAACAACGGCTGCCGGGTGTGCGGCGAGACGTTCGGCAGCGGGCACGAGCTGCGTGCGCACGCGCGGCGCCACCACGCCAAGAAGCGCCCCAAGAACTACGGGAAGAAGCCCACCAACCTCACTTGGCCCCTCAAGTGCGATCAGTGCTCACAAGAGGTGCATAGCGCGCGCGAGTACTGGAACCACTTCCGGCGGACCCATCCCGACAAGCCCTACCCCATTCAGAAGGACCACATCTGCGACGTGTGCGGAAAGAGCTTTAGGGGCAACGCGTTCCTGACGTACCACAAGCGCACCCACTCGGAGGAGCGGCAGTTCAAGTGCGAGACGTGCGGGAAGGCGTTCCACAACCCCGGCAACCTGTACATGCACGAGAAGATACACTCCGACCTCAGGCCCTACTCCTGCTCCGTCTGCTTCAAGGCCTTCAAGGGGAAGGGCGGACTCAGCAGACATTTTAGGTGTCACACCGGGGAGAGGCCTTACGATTGCGAGATCTGCGGCAAGGCGTTCAGTCAGTCGAACAGCCTCAAGGTGCACGTGCGCACGGTGCACTTAAAGCAGCCCGCGCCGTACGTCAGCCGCACCCGCCTGGAGAGGCGCCTCAAGGCCGGCACGGGCAAGGACAAACCTCACGAACCCTTCGCTTACACGTGA

Protein

MYSLQSNPLQTYFEETLGVNPVCSMDLPQCVCYVCAALLQKYSRFKTKCLLGQSVLYQILNSGKKITITSVQELDRSNLKTPFAVYTETDVKTIHTVSDDPKLPIKEEIDIAIDSKTSLENDLQVNEIFRKDGEYVKDEDYGDFPSQLEETSDDEPLLMHKIKKAKKAKKKTTKKDKNKVDYILAEDFQGVEATDDSSALPPEITEVLQSRKRGRPSKKRVQAEPAGKKRRRTKNTGGVTEDDIVLEECCTITTLSQEEQLEEINKRQYSSNYMNAQYKCQLCYKGFIDTEAWRHHVSKHSPSAGAIECPVCKFRFENKRQFQKHASNHEKKYACNYCDHVSATTTQAKQHQRWHRGVTYKCQHCDEVSTKWTSYLSHVRMKHPSEFICGACGSSFVSRLGLAMHKTMMHKDLDEKSEAGPYCAECDVQFASLEAYKRHMVTSVKHAELTLTNNGCRVCGETFGSGHELRAHARRHHAKKRPKNYGKKPTNLTWPLKCDQCSQEVHSAREYWNHFRRTHPDKPYPIQKDHICDVCGKSFRGNAFLTYHKRTHSEERQFKCETCGKAFHNPGNLYMHEKIHSDLRPYSCSVCFKAFKGKGGLSRHFRCHTGERPYDCEICGKAFSQSNSLKVHVRTVHLKQPAPYVSRTRLERRLKAGTGKDKPHEPFAYT

Uniprot

A0A437BE19 A0A194QHT0 A0A2A4JVY9 A0A2A4JVX9 A0A2A4JW96 A0A0N1PFS3 + More
A0A437BB58 A0A437BB57 A0A2A4JSJ1 A0A2A4JMX7 A0A194Q632 A0A2H1WDF0 A0A2W1BE97 A0A2A4JTI5 A0A2H1WS93 A0A2A4K8P9 H9IWV3 A0A2A4K5S6 A0A2W1BWP0 A0A2W1BQ38 J9JTF3 A0A146QUM0

Pubmed

26354079 28756777 19121390

EMBL

RSAL01000080 RVE48654.1 KQ458981 KPJ04495.1 NWSH01000508 PCG75979.1 + More
PCG75969.1 PCG75968.1 KQ460882 KPJ11499.1 RSAL01000098 RVE47649.1 RVE47650.1 NWSH01000652 PCG75007.1 NWSH01000946 PCG73425.1 KQ459463 KPJ00465.1 ODYU01007811 SOQ50892.1 KZ150164 PZC72671.1 PCG75008.1 ODYU01010673 SOQ55945.1 NWSH01000027 PCG80587.1 BABH01020992 BABH01020993 NWSH01000141 PCG79123.1 KZ149937 PZC77096.1 PZC77098.1 ABLF02027917 GCES01126360 JAQ59962.1

Proteomes

UP000283053 UP000053268 UP000218220 UP000053240 UP000005204 UP000007819 + More

PRIDE

H9IWV3

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF05485   THAP

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD
IPR006612   THAP_Znf
IPR038441   THAP_Znf_sf

SUPFAM

SSF57667 SSF57667

Gene 3D

3.30.40.180

ProteinModelPortal

A0A437BE19 A0A194QHT0 A0A2A4JVY9 A0A2A4JVX9 A0A2A4JW96 A0A0N1PFS3 + More
A0A437BB58 A0A437BB57 A0A2A4JSJ1 A0A2A4JMX7 A0A194Q632 A0A2H1WDF0 A0A2W1BE97 A0A2A4JTI5 A0A2H1WS93 A0A2A4K8P9 H9IWV3 A0A2A4K5S6 A0A2W1BWP0 A0A2W1BQ38 J9JTF3 A0A146QUM0

PDB

5V3M E-value=1.39505e-25, Score=291

KEGG

101737100 no KO assigned | (RefSeq) zinc finger protein 3 homolog

GO

GO:0005634 GO:0003676 GO:0008270 GO:0003677 GO:0046872 GO:0006281 GO:0016020 GO:0009156 GO:0044249 GO:0004879 GO:0003707 GO:0016286

Length:

670

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01281

Exp number, first 60 AAs:

0.00629

Total prob of N-in:

0.00045

outside

1 - 670

Pi

21.508726

Theta

20.077289

Tajima's D

0.072183

CLR

0.769671

CSRT

0.396830158492075

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree