SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12270
Annotation
PREDICTED:_nascent_polypeptide-associated_complex_subunit_alpha?_muscle-specific_form-like_[Bombyx_mori]
Location
Bomo_Chr20(-):11111106-11116534      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.446
 

Sequence

CDS
ATGTCAGGGGGGAGCCCCCCCATAATCAGCACCCCAGGCCCCTCCCATAAGGGACGCACAATAGGAACTAGCCTATTTGCCCAAACCCAAACTCGCCCAGGCCCGGACAATAAGCCCGGGCCTTCTGGAGCGTCCCAGGGACCGCCGAGAATCGGTTCGGGGGAAAGTTGCTTTCCCTTACCGACCGATAACTCGGGGACCCCTCGGCCGCGAAAGAAGGCCAGGTCCGAGTCCGACCGGGGCTCTTCTGAGGAGAAAGACAAGAGACCGAGGATAGGCCCCTCTTCTAGATCTGAGGGTGACGATAGCGAAGCTACCTCCATCACTCCTTCCTCTTCTGCATCCACATCTGCTTCGTCCTCCCCCTCCTCCTCTCGCTCAACGTCCCCCTCAAAGGAATCCCTTCCCTCACCCAAGAAACCCATCCCCAAACCTAGGGCACTCCCTAGGACGGTAGATGCTCCTAGGTTGAGAACCCCTCCGCGTTCTCCCTCTCCAGCACTCTCTCCTACCATGGCGGATAGTACTCGAGGTGCCCCCGCCTCAAGTTGCACGGCGGGCAACCTAGATTCAACTAGGTATGTGGACCTCGAGGCTACCCGACCCCCCCCTCCCTCAGTCCGAAAACTTCCTGACCCAATTCCGTCCACATCTTATGCGGCTATCGCCGCCTCCAAGCCAACTACTCCCAAGCCCCCAACACAGGTCCATCGAAATGTTCCTCCCCCGAGACCGAAGGGTCGCGCCCAGGAGGAACTGCGCCGACACCCGCCAGTAATGGTGGAGGCCCTTTCTAATTGGCCCCGCCACATGGCTGCCATTAGGGAGCGCCTAGGCCGCGCCCCCTCGGCGCGACCCTTCGGCACTGGTTTTAGGTTCCTGCCGTCGTCGGCTGAGGAATACAGGGCGGTCCAGGCCTACCTGTCGGAGGCCTCTGCCAGGGATAGTACCATTAAATGGTACTGCTATGCCCTGGCGGAGGAGATGCCCTCTAAGGTAGCTGTCCGGGGCCTCCCTGCCGACACCGACACGGCAGACGTTACCAACGCGTTGAAGGAGCTGGGGTTCCCGGCTCGATACGCTAGGTGCATTCGGTCCAAGAGAGGGCGACCGGGCAACGTGTTCCACGTTGCCCTGGATCACCTCTCAAAGGATGAACTCGCCCGCTTGTACTCAGTCAACGAACTGATGTACTTGCCGGGGGTGACGGTTGAGGGATGGCGACCAACCCGAGGGCCTGCGCAGTGTCACCGCTGCCAGGCCTACGGGCACGCCTCCCACAATTGTCACCGTGCGGTCCGCTGCGTGAGATGTGCTGCGGAGCACACTGTAGCGGACTGCCCGAGGCCGAGGGACGGCCCATTCTCCTGCGCCAATTGCGGGAAGGACCACGCCGCCGTTGATAGGCGGTGCCCGGTCTACCGCAAGAAGGCCAGGATGATGGGAGTAACCGTCCCTCCTCCGGTGCCACCGGTGCCACCGGTGCGTCGATCCGGGAATGCAGCTCCTTCCGCTGTAGCACCCACCTCGAAGGGGAAGGGGAAGGGGAAAGGGAAATCTTCCCAGCCCCAACCTCCTCCCACGTCCTCATTCATCCCCCCTGCCGTCACAGTGGAGGCCGAACCATCGGCGGCAACGCTGATGGCTGAAGCCAACACTCCGCGGCGGGGTAAACCTACTCCGACCCCACGTAGCTTCGCTATAACAAGACCGACCCCAAAACAAGACCGCGCTCCGGCCCGTGCCGGTGCCCCAACCCCACAAGCTCCAAATAAAAAAACCCTTAAAAACAGGAAAAAAAAGAGCAAAAGGAAATTGATGAAGAAAGCGCGAAGGGAGGCCTTAGAGAACGCTGCTCCCTCATCGGTTCCCGCAATACCTGCCTTAGACATGGAGGTTGACATCAACCCCACTACCGACCACATAATCGATGATCAACAACCTGGACCATCTTCACTGCCCCAGGCCCAACCGGCCACTTCAGGCATACAGCCCCCATTACCACCCCGCCCGCAGAGAGAGCGGCGCAGCGGCCGACAGGACACGCAGCCTGCCGGCTTCGCTGCCTGGCTCCTCTCCCTGTGGGAGAAACTGTCCGAGGAGCTGCGCATCATCTACTGGAACCCCGACGGGATAGGATCCCGGAGGTCGGAATTAATCCGACTCGCCCAGGAGTATGACCCGCAGGTTATCCTCCTGGGCGAGACCAAGCTCAAACCTCGACAAGATTTTAGGATGCCCAACTACTTCGTGTACCGACGGGACGAACTGACCTCCGCAGTGCCCCTGAACGGGCGCCCGTTCAGGGGCACTGCGGCGCTCGTCAGGAGGGACGTGGTGCACGAGGAGCTTGAGCTACTGACCTTCGCCTCTACCAGAACGGTCGGGGTGAGGGTCCACGTACCGGGGGCCGAATTGCGGATTTATGCCGCGTATCGACCCCCGGGTCCTGATTTTGTCGAGGACGATATTAGACGGGCCTTGAACCATGATCGCCATCCGGCCTTGGTGGTCGGGGACCTCAATGCGAAACATGTCGCTTGGGGCTCCCGAATCATCACGCCGCCCGGAAGGCGATTGTACGAGGATGCCGAAAGGGGGGACTACTGCGTGGTCGGCCCCAACGAACCCACACACGTTCCAACGTTGGCCCGGTACCAACCGGACGTATTGGACGTGTGTGTTCACAAGGGGCTACAGTGCCCTCTAGCGATAGAGGCACTGTACGACCTGAGTACCCCTCACCTACCGATCTTGGTCACGGTGGGTTTGGGGCTCACTCGGGTCGCGACATCCCCTCTCAGGCCTAGGGTCGACTGGCAGTCCTTTACGGGACTGCTGGCCGACCAATCCTTGTTTCAAGACCCGTCTACCCCTGATGAGGTCGACACGGCGGCTTCCCGTCTCGTCGACACCATCAGGGGAGCCCTGGACCAAGTGACGACTCTGGTACCCAGCGGGGGGCCCAGAGCGGAACTCCCGGTGCACCTCAAGACGTTAATTCGTCGGAAGAGGGCACTGAGGAGGCTCTGGGCGACATCTAGGTGTCCCAGGATTAAGCGCGAGCTCAACCGACTTGAGGGGGAGCTGGCGACTAAGATGCGGACTTACCGGGGTGATTCCTGGGAGGGGGGACTGTTGGACGCGTCCGACGACCTTCTGGCCAACTCGCTGGAGCGGCAGTTCACTCCGAATGTCTCTGCACCCTCGATGGCTGCATTCCATCGCGAGGTGTCAGAGGGTGTAATCCACTTCCTCAAACCGGAATCGCCGGGAGTCGAGCTGGGAGATGACGACTTAGTCACTCCCGGCGAGGTGCGCCTCCTCATCAAGTTGATGAAGAGGCGCAAAGCCCCCGGCGAGGACGGTATTCCTCCCCTCGCCCTGCAAAACCTCCCTCCCTCAATCGTGTCAGCAATGACACGATTGTTTAATTCCATTCTCCGGGTAGGACACTTCCCTGGAACTTGGAAACTGGGCAAGATCATCGTCTTGCCCAAACCCGGCAAGGACAGGAGAAAGCCCTCCAGTTACCGACCGATTACCTTGCTCTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTCCTGAGGAGAATATCGCCGTATATTCTCCTCAGGCCGGAGCAATTCGGCTTTAGAAGCGGCCACTCGACGACTCTGCAACTGACCCGTGTCCTGCATCACTTGGCGGACCGGCGAAACTCGGGCCAATACACGGTCGCGGTCCTCCTCGATATCGAGAAGGCCTTCGACCGTGTGTGGCACGAGGGGCTGGTCCACAAGCTGCGGGACGCGGGCCTACCGCACGCTCACGTGCGACTGCTCGGGTCGTATCTGGAGGGCAGAACCTTCTTTGTCGCGGTCGAGGGCGCACGGTCTTCCGTGCGTCCCATTACGGCCGGGGTTCCCCAGGGTAGTGTCCTATCACCTATCCTATACGCCCTCTACACCAATGACATCCCCACCCTGGAGGGTCACCTTCGGGCGTGGGAGGAGGACGTGAAGTTGGCCTTGTTCGCTGACGACTCGGCCTACTTCTCGTCCTCTCCGTTCCCCTCTGCAGCCATTATGAGGATGCAGAGGCTTTTGGATTTACTGCCCCAGTGGCTGGACCGTTGGAGAGTCGCGGTCAATGTGGGAAAGACCGCGGCCTTACTCTACGGTCCGGTCCGTATCAGAGTCGTCCCAAAGAAACTCAGCCTCCGAGGTGTGAATGTCGAGTTCAGGACCACGGTCCGGTATCTCGGATGCGACATCGACCGCTCCTTGAGCATGGTCGCGCACGTCAACCGAGTCATCGGTCAGACTCGCGCGGCCAGGTTCTTGTTGCGGCCGCGATCTAGGTTGCAGGCCCAGCAGAGTCTTTCCCTCCGCATTATCGTCGGGGCCGGGCAGTACGTCAGAAATGACGTTATTGCCCGGGACCTAGGTGTGGAGTCGCTCGTGGAGTTTGTGACTAGGCTCGCCCGTAATATGTACGAGCGAGCCGAAAACGGGCCCCATGAGCATCTCCACAACATAGCCCCGCTGCACGCCAGACCACCGGATGGTACGGCGTTGCCGCGGGAGCTATTGGTACCCCCGACGATCGTTCGGAGATAA
Protein
MSGGSPPIISTPGPSHKGRTIGTSLFAQTQTRPGPDNKPGPSGASQGPPRIGSGESCFPLPTDNSGTPRPRKKARSESDRGSSEEKDKRPRIGPSSRSEGDDSEATSITPSSSASTSASSSPSSSRSTSPSKESLPSPKKPIPKPRALPRTVDAPRLRTPPRSPSPALSPTMADSTRGAPASSCTAGNLDSTRYVDLEATRPPPPSVRKLPDPIPSTSYAAIAASKPTTPKPPTQVHRNVPPPRPKGRAQEELRRHPPVMVEALSNWPRHMAAIRERLGRAPSARPFGTGFRFLPSSAEEYRAVQAYLSEASARDSTIKWYCYALAEEMPSKVAVRGLPADTDTADVTNALKELGFPARYARCIRSKRGRPGNVFHVALDHLSKDELARLYSVNELMYLPGVTVEGWRPTRGPAQCHRCQAYGHASHNCHRAVRCVRCAAEHTVADCPRPRDGPFSCANCGKDHAAVDRRCPVYRKKARMMGVTVPPPVPPVPPVRRSGNAAPSAVAPTSKGKGKGKGKSSQPQPPPTSSFIPPAVTVEAEPSAATLMAEANTPRRGKPTPTPRSFAITRPTPKQDRAPARAGAPTPQAPNKKTLKNRKKKSKRKLMKKARREALENAAPSSVPAIPALDMEVDINPTTDHIIDDQQPGPSSLPQAQPATSGIQPPLPPRPQRERRSGRQDTQPAGFAAWLLSLWEKLSEELRIIYWNPDGIGSRRSELIRLAQEYDPQVILLGETKLKPRQDFRMPNYFVYRRDELTSAVPLNGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIRRALNHDRHPALVVGDLNAKHVAWGSRIITPPGRRLYEDAERGDYCVVGPNEPTHVPTLARYQPDVLDVCVHKGLQCPLAIEALYDLSTPHLPILVTVGLGLTRVATSPLRPRVDWQSFTGLLADQSLFQDPSTPDEVDTAASRLVDTIRGALDQVTTLVPSGGPRAELPVHLKTLIRRKRALRRLWATSRCPRIKRELNRLEGELATKMRTYRGDSWEGGLLDASDDLLANSLERQFTPNVSAPSMAAFHREVSEGVIHFLKPESPGVELGDDDLVTPGEVRLLIKLMKRRKAPGEDGIPPLALQNLPPSIVSAMTRLFNSILRVGHFPGTWKLGKIIVLPKPGKDRRKPSSYRPITLLSHVGKLFERLLLRRISPYILLRPEQFGFRSGHSTTLQLTRVLHHLADRRNSGQYTVAVLLDIEKAFDRVWHEGLVHKLRDAGLPHAHVRLLGSYLEGRTFFVAVEGARSSVRPITAGVPQGSVLSPILYALYTNDIPTLEGHLRAWEEDVKLALFADDSAYFSSSPFPSAAIMRMQRLLDLLPQWLDRWRVAVNVGKTAALLYGPVRIRVVPKKLSLRGVNVEFRTTVRYLGCDIDRSLSMVAHVNRVIGQTRAARFLLRPRSRLQAQQSLSLRIIVGAGQYVRNDVIARDLGVESLVEFVTRLARNMYERAENGPHEHLHNIAPLHARPPDGTALPRELLVPPTIVRR

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6AR3     E-value=1.16315e-05,     Score=122

Ontologies

KEGG
105842529    no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form
GO

Topology

Length:
1533
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01055
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1533
 
 

Population Genetic Test Statistics

Pi
1.554422
Theta
3.076066
Tajima's D
-0.376935
CLR
36.623478
CSRT
0.28403579821009
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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