SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO12252
Annotation
PREDICTED:_nascent_polypeptide-associated_complex_subunit_alpha?_muscle-specific_form-like_[Bombyx_mori]
Location
Bomo_Chr20(-):10636196-10641464      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.389
 

Sequence

CDS
ATGTCAGGGGGGAGCCCCCCCATAATCAGCACCCCAGGCCCCTCCCATAAGGGACGCACAATAGGAACTAGCCTATTTGCCCAAACCCAAACTCGCCCAGGCCCGGACAATAAGCCCGGGCCTTCTGGAGCGGCCCAGGGACCGCCGAGAATCGGTTCGGGGGAAAGTTGCTTTCCCTTACCGACCGATAACTCGGGGACCCCTCGGCCGCGAAAGAAGGCCAGGTCCGAGTCCGACCGGGGCTCTTCTGAGGAGAAAGACAAGAGACCGAGGATAGGTCCCTCTTCCAGATCCGAGGGTGACGATAGCGAAGCTACCTCCGTCACTCCTTCCTCTTCTGCATCCACATCTGCTTCGTCCTCCCCCTCCTCCTCTCGCTCAACGTCCCCCTCAAAGGAATCCCTTCCCTCACCCAAGAAACCCATCCCCAAACCTAGGGCACTCCCTAGGACGGTAGATGCTCCTAGGTTGAGAACCCCTCCGCGTTCTCCCTCTCCAGCACTCTCTCCTATCATGGCGGATAGTACTCGAGGTGCCCCCGCCTCAAGTTGCACGGCGGGCAACCTAGATTCAACTAGGTATGTGGACCTCGAGGCTACCCGACCCCCCCCTCCCTCAGTCCGAAAACTTCCTGACCCAATTCCGTCCACATCTTATGCGGCTATAGCCGCCTCCAAGCCAATTACTCCCAAGCCCCCAACTCAGGTCCATCGAAATGTTCCTCCCCCGAGACCGAAGGGTCGCGCCCAGGAGGAACTGCGCCGACACCCGCCAATAATGGTGGAGGCCCTTTCTAATTGGCCCCGCCACATGGCTGCCATTAGGGAGCGCCTAGGCCGCGCCCCCTCGGCGCGACCCTTCGGCACTGGTTTTAGGTTCCTGCCGTCGTCGGCTGAGGAATACAGGGCGGTCCAGGCCTACCTGTCGGAGGCCTCTGCCAGGGATAGTACCATTAAATGGTACTGCTATGCCCTGGCGGAGGAGATGCCCTCCAAGGTAGCTGTCCGGGGCCTCCCTGCCGACACCGACACGGCAGACGTTACCAACGCGTTGAAGGAGCTGGGGTTCCCGGCTCGATACGCTAGGTGCATTCGGTCCAAGAGAGGGCGACCGGGCAGCGTATTCCACGTTGCCCTGGATCACCTCTCAAAGGATGAACTCGCCCGCTTGTACTCAGTCAACGAACTGATGTACTTGCCGGGGGTGACGGTTGAGGGATGGCGACCAACCCGAGGGCCTGCGCAGTGTCACCGCTGCCAGGCCTACGGGCACGCCTCCCACAATTGTCACCGTGCGGTCCGCTGCGTGAGATGTGCTGCGGAGCACACTGTAGCGGACTGCCCGAGGCCGAGGGACGGCCCATTCTCCTGCGCCAATTGCGGGAAGGACCACGCCGCCGTTGATAGGCGGTGCCCGGTCTACCGCAAGAAGGCCAGGATGATGGGAGTAACCGTCCCTCCTCCGGTGCCACCGGTGCCACCGGTGCGTCGATCCGGGAATGCAGCTCCTTCCGCTGTAGCACCCACCTCGAAGGGGAAGGGGAAGGGGAAAGGGAAATCTTCCCAGCCCCAACCTCCTCCCACGTCCTCATTCATCCCCCCTGCCGTCACAGTGGAGGCCGAACCATCGGCGGCAACGCTGATGGCTGAAGCCAACACTCCGCGGCGGGGTAAACCTACTCCGACCCCACGTAGCTTCGCTATAACAAGACCGACCCCAAAACAAGACCGCGCTCCGGCCCGTGCCGGTGCCCCAACCCCACAAGCTCCAAATAAAAAAACCCTTAAAAACAGGAAAAAAAAGAGCAAAAGGAAATTGATGAAGAAAGCGCGAAGGGAGGCCTTAGAGAACGCTGCTCCCTCATCGGTTCCCGCAATACCTGCCATAGACATGGAGGTTGACATCAACCCCACTACCGACCACATAATCGATGATCAACAACCTGGACCATCTTCATTGCCCCAGGCCCAACCGGCCACTTCAGGCATACAGCCCCCATTACCACCCCGCCCGCAGAGGGAGCGGCGCAGCGGCCGACAGGACACGCAGCCTGCCGGCTTCGCTGCCTGGCTCCTCTCCCTGTGGGAGAAACTGTCCGAGGAGCTGCGCATCATCTACTGGAACCCCGACGGGATAGGGTCCCGGAGGTCGGAGCTCATCCGACTCGCCCAGGAGTATGACCCGCAGGTTATCCTCCTGGGCGAGACCAAGCTCAAACCTCGACAAGATTTTAGGATGCCCAACTACTTCGTGTACCGACGGGACGAACTGACCTCCAGCGGGCGCCCGTTCAGGGGCACTGCGGCGCTCGTCAGGAGGGACGTGGTGCACGAGGAGCTTGAGCTACTGACCTTCGCCTCTACCAGAACGGTCGGGGTGAGGGTCCACGTACCGGGGGCCGAATTGCGGATTTATGCCGCGTATCGACCCCCGGGTCCTGATTTTGTCGAGGACGATATTAGACGGGCCTTGAACCATGATCGCCATCCGGCCTTGGTGGTCGGGGACCTCAATGCGAAACATGTCGCTTGGGGCTCCCGAATCATCACGCCGCCCGGAAGGCGATTGTACGAGGATGCCGAAAGGGGGGACTACTGCGTGGTCGGCCCCAACGAACCCACACACGTTCCAACGTTGGCCCGGTACCAACCGGACGTATTGGACGTGTGTGTTCACAAGGGGCTACAGTGCCCTCTAGCGATAGAGGCACTGTACGACCTGAGTACCCCTCACCTACCGATCTTGGTCACGGTGGGTTTGGGGCTCACTCGGGTCGCGACATCCCCTCTCAGGCCTAGGGTCGACTGGCAGTCCTTTACGGGACTGCTGGCCGACCAATCCTTGTTTCAAGACCCGTCTACCCCTGATGAGGTCGACACGGCGGCTTCCCGTCTCGTCGACACCATCAGGGGAGCCCTGGACCAAGTGACGACTCTGGTACCCAGCGGGGGGCCCAGAGCGGAACTCCCGGTGCACCTCAAGACGTTAATTCGTCGGAAGAGGGCACTGAGGAGGCTCTGGGCGACATCTAGGTGTCCCAGGATTAAGCGCGAGCTCAACCGACTTGAGGGGGAGCTGGCGACTAAGATGCGGACTTACCGGGGTGATTCCTGGGAGGGGGGACTGTTGGACGCGTCCGACGACCGTACGATGGCCCCCCTTCACCGCATCTGTCGCCGGCTCACCAACAAGCCTTCCCCCACTTGCCCCTTGGAGGACGAGGGGGGAAGACGGTGTTTTACACCGTTGGCTCGTGCCGAAGTCCTGGCCAACTCGCTGGAGCGGCAGTTCACTCCGAATGTCTCTGCACCCTCGATGGCTGCATTCCATCGCGAGGTGTCAGAGGGTGTAATCCACTTCCTCAAACCGGAATCGCCGGGAGTCGAGCTGGGAGATGACGACTTAGTCACTCCCAGCGAGGTGCGCCTCCTCATCAAGTTGATGAAGAGGCGCAAAGCCCCCGGCGAGGACGGTATTCCTCCCCTCGCCCTGCAAAACCTCCCTCCCTCAATCGTGTCAGCAATGACACGATTGTTTAATTCCATTCTCCGGGTAGGACTCTTCCCTGGAACTTGGAAACTGGGCAAGATCATCGTCTTGCCCAAACCCGGCAAGGACAGGAGAAAGCCCTCCAGTTACCGACCGATTACCTTGCTCTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTCCTGAGGAGAATATCGCCGTATATTCTCCTCAGGCCGGAGCAATTCGGCTTTAGAAGCGGCCACTCGACGACTCTGCAACTGACCCGTGTCCTGCATCACTTGGCGGACCGGCGAAACTCGGGCCAATACACGGTCGCGGTCCTCCTCGATATCGAGAAGGCCTTCGACCGTGTGTGGCACGAGGGGCTGGTCCACAAGCTGCGGGACGCGGGCCTACCGCACGCTCACGTGCGACTGCTCGGGTCGTATCTGGAGGGTAGAACCTTCTTTGTCGCGGTCGAGGGCGCACGGTCTTCCGTGCGTCCCATTACGGCCGGGGTTCCCCAGGGTAGTGTCCTATCACCTATCCTATACGCCCTCTACACCAATGACATCCCCACCCTGGAGGGTCACCTTCGGGCGTGGGAGGAGGACGTGAAGTTGGCCTTGTTCGCTGACGACTCGGCCTACTTCTCGTCCTCTCCGTTCCCCTCTGCAGCCATTATGAGGATGCAGAGGCTTTTGGATTTACTGCCCCAGTGGCTGGACCGTTGGAGAGTCGCGGTCAATGTGGGAAAGACCGCGGCCTTACTCTACGGTCCGGTCCGTATCAGAGTCGTCCCAAAGAAACTCAGCCTCCGAGGTGTGAATGTCGAGTTCAGGACCACGGTCCGGTATCTCGGATGCGACATCGACCGCTCCTTGAGCATGGTCGCGCACGTCAACCGAGTCATCGGTCAGACTCGCGCGGCCAGGTTCTTGTTGCGGCCGGTGTTTGCGTCCGGGCTTCCGACCAGGACCAAACTCGCCATTTACAAGACATACGTCCGTTCCCGCCTCACATACGCTGCTGCGGCCTGGTATCACCTGTTGTCGCCGTCCCAGCGATCTAGGTTGCAGGCCCAGCAGAGTCTTTCCCTCCGCATTATCGTCGGGGCCGGGCAGTACGTCAGAAATGACGTTATTGCCCGGGACCTAGGTGTGGAGTCGCTCGTGGAGTTTGTGACTAGGCTCGCCCGTAATATGTACGAGCGAGCCGAAAACGGGCCCCATGAGCATCTCCACAACATAGCCCCGCTGCACGCCAGACCACCGGATGGTACGGCGTTGCCGCGGGAGCTATTGGTACCCCCGACGATCGTTCGCAGATAA
Protein
MSGGSPPIISTPGPSHKGRTIGTSLFAQTQTRPGPDNKPGPSGAAQGPPRIGSGESCFPLPTDNSGTPRPRKKARSESDRGSSEEKDKRPRIGPSSRSEGDDSEATSVTPSSSASTSASSSPSSSRSTSPSKESLPSPKKPIPKPRALPRTVDAPRLRTPPRSPSPALSPIMADSTRGAPASSCTAGNLDSTRYVDLEATRPPPPSVRKLPDPIPSTSYAAIAASKPITPKPPTQVHRNVPPPRPKGRAQEELRRHPPIMVEALSNWPRHMAAIRERLGRAPSARPFGTGFRFLPSSAEEYRAVQAYLSEASARDSTIKWYCYALAEEMPSKVAVRGLPADTDTADVTNALKELGFPARYARCIRSKRGRPGSVFHVALDHLSKDELARLYSVNELMYLPGVTVEGWRPTRGPAQCHRCQAYGHASHNCHRAVRCVRCAAEHTVADCPRPRDGPFSCANCGKDHAAVDRRCPVYRKKARMMGVTVPPPVPPVPPVRRSGNAAPSAVAPTSKGKGKGKGKSSQPQPPPTSSFIPPAVTVEAEPSAATLMAEANTPRRGKPTPTPRSFAITRPTPKQDRAPARAGAPTPQAPNKKTLKNRKKKSKRKLMKKARREALENAAPSSVPAIPAIDMEVDINPTTDHIIDDQQPGPSSLPQAQPATSGIQPPLPPRPQRERRSGRQDTQPAGFAAWLLSLWEKLSEELRIIYWNPDGIGSRRSELIRLAQEYDPQVILLGETKLKPRQDFRMPNYFVYRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIRRALNHDRHPALVVGDLNAKHVAWGSRIITPPGRRLYEDAERGDYCVVGPNEPTHVPTLARYQPDVLDVCVHKGLQCPLAIEALYDLSTPHLPILVTVGLGLTRVATSPLRPRVDWQSFTGLLADQSLFQDPSTPDEVDTAASRLVDTIRGALDQVTTLVPSGGPRAELPVHLKTLIRRKRALRRLWATSRCPRIKRELNRLEGELATKMRTYRGDSWEGGLLDASDDRTMAPLHRICRRLTNKPSPTCPLEDEGGRRCFTPLARAEVLANSLERQFTPNVSAPSMAAFHREVSEGVIHFLKPESPGVELGDDDLVTPSEVRLLIKLMKRRKAPGEDGIPPLALQNLPPSIVSAMTRLFNSILRVGLFPGTWKLGKIIVLPKPGKDRRKPSSYRPITLLSHVGKLFERLLLRRISPYILLRPEQFGFRSGHSTTLQLTRVLHHLADRRNSGQYTVAVLLDIEKAFDRVWHEGLVHKLRDAGLPHAHVRLLGSYLEGRTFFVAVEGARSSVRPITAGVPQGSVLSPILYALYTNDIPTLEGHLRAWEEDVKLALFADDSAYFSSSPFPSAAIMRMQRLLDLLPQWLDRWRVAVNVGKTAALLYGPVRIRVVPKKLSLRGVNVEFRTTVRYLGCDIDRSLSMVAHVNRVIGQTRAARFLLRPVFASGLPTRTKLAIYKTYVRSRLTYAAAAWYHLLSPSQRSRLQAQQSLSLRIIVGAGQYVRNDVIARDLGVESLVEFVTRLARNMYERAENGPHEHLHNIAPLHARPPDGTALPRELLVPPTIVRR

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6AR3     E-value=1.85595e-06,     Score=129

Ontologies

KEGG
105842529    no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form
GO

Topology

Length:
1606
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01607
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1606
 
 

Population Genetic Test Statistics

Pi
196.364226
Theta
170.503434
Tajima's D
0.260269
CLR
135.516925
CSRT
0.451627418629069
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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