Silkworm Genome Informatics Database

Gene

KWMTBOMO12130

Pre Gene Modal

BGIBMGA008125

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr20(+):8134397-8140895 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.019

CDS

ATGGCAGCTAGGCCGAGTATTCCTTCCACCCAGAGGCCATCCCAATCCTCTCATGTCCCTCTCCCGAGGCCGAAGGGTCGTGCCCAAGAGGAGCTGCGCCGACATCCGCCAATAATGGTGGAGGCCCTCCCTAATTGGTCCCGCCACATGGCGGCCATTAGGGAGCGCCTCGGTCGCGCCCCCTCGGTGCGACCCTTCGGCGCCGGCTTTAGATTCCTGCCGACGTCGGTAGAGGAATACAGGGCGGTCCAGGCCTACCTGTCGGAGGCCTCTGCCAGGGATGGTACCATAAAATGGTACTGCTATGCCCTGACAGGGGAGATTCCGACTAAGGTGGCTGTCCGGGGCCTCCCTGCCGATACTGACGCGGCAGAAGTAACCGATGCCCTGAAGGAGCTGGGGTTTCCGGCTCGTCACGCCAGGTGCATCAGGTCCCAGAGAGGGCGCCCGGGCTGCGTGTTTCACGTAGCCTTGGACCACCTCTCGAAGGACGACCTCGCCCGCCTGTACGCAGTCAATGAACTGCTGTACTTGCCGGGGGTGACGATTGAGGGATGGCGACCAACCCGCGGGCCTGCGCAGTGTCATCGCTGCCAGGCCTTCGGGCACGCCTCCAATAATTGTCACCGAGCGGTCCGCTGCGTTCGATGTGCTGGGGAGCATGTCGTAGCGGACTGCCCGAGGCCGAGGGACGGCCCATTCTCCTGCGCCAATTGCGGGAAAGATCACGCTGCCGTCGACAGGCGGTGCGCGGTCTACCGCAAGAGGGCCAGGATGATGGGAGTAACCGTCCCTCCTCCTGCGCCGTTGGTGCCTCGATCCGGGAACACAGCTCCTCCTTCTGTAGCTCCCATTCCGAAGGGGAAGGGGAAAGGGAAAGGGAAATCCTCCCAGCCCCAGCCCCCTCCCCCGTCCTCACCCATCCCCCCTGCCGTGTCAGTGGAGGCCAATCCATCAGCGGCAACGCTGATGGCAGAGGCCAACGCTCCGCGGCGGGGTATACCTGTTCCTACCCCTCGTGGTTCACACGCTGTTAGATTGCCCCATCCTAATAGCAGTGTTCCAGCTCGTGCTGGAACTCAAGTCCCACAATTATCAGGTCCCAAACAAAAAAAAAATCGATTAAAAAAATTAAAAAAAAATTTAAGGAAGAGAGCCCAACGGGATGCAGTGGTGAGTGCTCCTACTGCACCGGCTCCCGCGGCTCCCTTAACAATGGAGGTGGACGTGAACCCACCCATCGACCCAACTTCTCAACCGACTTCACAATCGGGAACGACCCCACTGCCCCAGGCCCAACCAGCCATCTCGGGCACATCTCAGCCCCCCCTCCCCCCCCCGCCCTCAGCGCGAGCGCCGCAGCGGTCGGCAGGCCTCCCAGCCTGCCGGCTTTGCTGCATGGCTGCTGGCGCTCTGGGAAAACTTGGCCGAGTACAACCCGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCAGGATGCGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTCGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCACATCGACAAGGTCGGTCGGTGTGAGGGTACACACCTCTGGGGGGGATATGCGGATTTATGCCGCGTATAGACCCCCGGGGCCTGAATTTCACCCTGAGGACATAAGACGGGCCCTGAATCACGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTTAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCCGTGGTCGGCCCCGACGAACCCACACACGTCCCGACCGCCGCGCGCTATCAGCCCGATGTGCTGGACGTGTGTGTGCACAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGATAAAGCGCGAGCTTAATGAACTGGAAGCGGAGCTGGCGACAAAGATTAGCACCTTCCGGGGCTATGCCTGGCAGGAGAGGATCGAGGAGGCCCGCGAGGACCCCTCCTCAGTATCCCTCCACCGGCTTTGTCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCTACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGAAATGCTGGAGCGGCAGTTCGCTCCTAATGACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATCTCATCACTCCCAGCGAATTGCGCCTCATCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCTTTTTTCCACTTCCCTGAAATGGTCGTGTCATGTATGACACGGCTGTTCAACTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGACAGGAGAAATCCCTCCAGTTACCGTCCGGTCACGCTGCTGTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGATGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGTAGCGGTCACTCGACAACGCTGCAATTGGTCCGCATCATGCATCACTTGGCGGATCGGACCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGACATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCCACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCGCAGGGGAGCGTCCTGGCACCATTCCTCTACGCTCTCTATACCAACGATATTCCCACGCTCGAGGGCAACCTCGAAGCCTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCATCCAACTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGTTATTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAATAAGGCGTTGGCGGCCGCTCGCTACGCGAGATTCCTCCTCCGGCCGGTGTTGGCCTCCAGGTTTCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGGTCACGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGTAATGCCGTAATCGCCCGGGATCTGGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATTTAGCTCCCTTGCACGCTAGACCACCTGATGGTCTGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGAACTGTCGCAAATACAAATCTAAGATAAGGATGAATCGCATTAAGACTGGTGGTAGTATTGCTGAATAA

Protein

MAARPSIPSTQRPSQSSHVPLPRPKGRAQEELRRHPPIMVEALPNWSRHMAAIRERLGRAPSVRPFGAGFRFLPTSVEEYRAVQAYLSEASARDGTIKWYCYALTGEIPTKVAVRGLPADTDAAEVTDALKELGFPARHARCIRSQRGRPGCVFHVALDHLSKDDLARLYAVNELLYLPGVTIEGWRPTRGPAQCHRCQAFGHASNNCHRAVRCVRCAGEHVVADCPRPRDGPFSCANCGKDHAAVDRRCAVYRKRARMMGVTVPPPAPLVPRSGNTAPPSVAPIPKGKGKGKGKSSQPQPPPPSSPIPPAVSVEANPSAATLMAEANAPRRGIPVPTPRGSHAVRLPHPNSSVPARAGTQVPQLSGPKQKKNRLKKLKKNLRKRAQRDAVVSAPTAPAPAAPLTMEVDVNPPIDPTSQPTSQSGTTPLPQAQPAISGTSQPPLPPPPSARAPQRSAGLPACRLCCMAAGALGKLGRVQPEVVLLGETKLRPQDAFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFTSTRSVGVRVHTSGGDMRIYAAYRPPGPEFHPEDIRRALNHDSRPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHVPTAARYQPDVLDVCVHKGLRCPVTIEALIKRELNELEAELATKISTFRGYAWQERIEEAREDPSSVSLHRLCRQLSNRPAPTCLLVDERGNRCFSAQARADVLAEMLERQFAPNDSAPSEAAFHQSVEESVASLLSSPVPPLGDGDLITPSELRLIIKRMKRRKAPGEDGIPSLAFFHFPEMVVSCMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPVTLLSHVGKLFERLLLRRMSPHILLRPEQFGFRSGHSTTLQLVRIMHHLADRTNARQYTAAVFLDIEKAFDRVWHAGLIHKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPFLYALYTNDIPTLEGNLEAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHANKALAAARYARFLLRPVLASRFPVRTKLGIYKTYVRSRITYAAAAWYHLIPQVTRVKLQAQQNLALRTIVGAGRYVSNAVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNLAPLHARPPDGLALPRELLEPPAMNCRKYKSKIRMNRIKTGGSIAE

Uniprot

NA

ProteinModelPortal

NA

PDB

6AR3 E-value=8.97568e-05, Score=114

KEGG

105842529 no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form

GO

GO:0003676 GO:0008270 GO:0005488 GO:0019001 GO:0031683 GO:0007165 GO:0005525 GO:0008033 GO:0016787

Length:

1266

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00928

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.00005

outside

1 - 1266

Pi

15.799259

Theta

20.517509

Tajima's D

-1.509127

CLR

368.262414

CSRT

0.0570471476426179

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree